View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3872_low_42 (Length: 220)

Name: NF3872_low_42
Description: NF3872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3872_low_42
NF3872_low_42
[»] chr6 (1 HSPs)
chr6 (67-213)||(4386853-4386999)
[»] chr4 (4 HSPs)
chr4 (159-205)||(3786298-3786344)
chr4 (162-202)||(33090201-33090241)
chr4 (162-205)||(34113118-34113161)
chr4 (162-205)||(38811000-38811043)
[»] chr7 (2 HSPs)
chr7 (162-205)||(26639648-26639691)
chr7 (162-205)||(22328185-22328229)
[»] chr3 (2 HSPs)
chr3 (162-205)||(1683804-1683847)
chr3 (165-203)||(5270705-5270743)
[»] chr1 (3 HSPs)
chr1 (162-205)||(41136144-41136187)
chr1 (162-202)||(12318318-12318358)
chr1 (162-205)||(22079633-22079676)
[»] chr8 (3 HSPs)
chr8 (163-205)||(15691121-15691163)
chr8 (162-203)||(10240445-10240486)
chr8 (167-203)||(20684851-20684887)
[»] chr5 (2 HSPs)
chr5 (170-205)||(317096-317131)
chr5 (162-205)||(4160920-4160963)


Alignment Details
Target: chr6 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 67 - 213
Target Start/End: Complemental strand, 4386999 - 4386853
Alignment:
Q  67 tcttatgcttctcttatcccataggtttctctctgtttaagtaaatttgtgtccgtctcttgtttatagtttagtgatgatccaataaagggtttttgtg 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4386999 tcttatgcttctcttatcccataggtttctctctgtttaagtaaatttgtttccgtctcttgtttatagtttagtgatgatccaataaagggtttttgtg 4386900  T
Q  167 aatttggtaactccaaatctcacatcaatgaaatttagaataatcta 213  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  4386899 aatttggtaactccaaatctcacatcaatgaaatttagattaatcta 4386853  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 3786344 - 3786298
Alignment:
Q  159 tttttgtgaatttggtaactccaaatctcacatcaatgaaatttaga 205  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||    
T  3786344 tttttgtgaattcggtaactccatatctcacatcaatgaaatttaga 3786298  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 33090241 - 33090201
Alignment:
Q  162 ttgtgaatttggtaactccaaatctcacatcaatgaaattt 202  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  33090241 ttgtgaattcggtaactccaaatctcacatcaatgaaattt 33090201  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 34113161 - 34113118
Alignment:
Q  162 ttgtgaatttggtaactccaaatctcacatcaatgaaatttaga 205  Q
    |||||||||||||||||| || ||||| ||||||||||||||||    
T  34113161 ttgtgaatttggtaactctaattctcatatcaatgaaatttaga 34113118  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 205
Target Start/End: Original strand, 38811000 - 38811043
Alignment:
Q  162 ttgtgaatttggtaactccaaatctcacatcaatgaaatttaga 205  Q
    ||||||||||||||||| ||||||||| | ||||||||||||||    
T  38811000 ttgtgaatttggtaacttcaaatctcaaaccaatgaaatttaga 38811043  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 26639691 - 26639648
Alignment:
Q  162 ttgtgaatttggtaactccaaatctcacatcaatgaaatttaga 205  Q
    ||||||||| |||||||||||||||||||||||| |||||||||    
T  26639691 ttgtgaattcggtaactccaaatctcacatcaataaaatttaga 26639648  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 205
Target Start/End: Original strand, 22328185 - 22328229
Alignment:
Q  162 ttgtgaatttggt-aactccaaatctcacatcaatgaaatttaga 205  Q
    ||||||||| ||| || ||||||||||||||||||||||||||||    
T  22328185 ttgtgaattcggtcaattccaaatctcacatcaatgaaatttaga 22328229  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 1683847 - 1683804
Alignment:
Q  162 ttgtgaatttggtaactccaaatctcacatcaatgaaatttaga 205  Q
    ||||||||| |||||||| |||||||||||||||||||||||||    
T  1683847 ttgtgaattcggtaactctaaatctcacatcaatgaaatttaga 1683804  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 5270743 - 5270705
Alignment:
Q  165 tgaatttggtaactccaaatctcacatcaatgaaattta 203  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  5270743 tgaattcggtaactcaaaatctcacatcaatgaaattta 5270705  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 41136187 - 41136144
Alignment:
Q  162 ttgtgaatttggtaactccaaatctcacatcaatgaaatttaga 205  Q
    |||| |||| ||||||||||||||||||||||||||||||||||    
T  41136187 ttgtaaattcggtaactccaaatctcacatcaatgaaatttaga 41136144  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 12318318 - 12318358
Alignment:
Q  162 ttgtgaatttggtaactccaaatctcacatcaatgaaattt 202  Q
    ||||||||| |||| ||||||||||||||||||||||||||    
T  12318318 ttgtgaattcggtagctccaaatctcacatcaatgaaattt 12318358  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 22079676 - 22079633
Alignment:
Q  162 ttgtgaatttggtaactccaaatctcacatcaatgaaatttaga 205  Q
    ||||||||| || |||||||||||||| ||||||||||||||||    
T  22079676 ttgtgaattcggaaactccaaatctcatatcaatgaaatttaga 22079633  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 15691163 - 15691121
Alignment:
Q  163 tgtgaatttggtaactccaaatctcacatcaatgaaatttaga 205  Q
    |||||||| |||||||||||| |||||||||||||||||||||    
T  15691163 tgtgaattcggtaactccaaacctcacatcaatgaaatttaga 15691121  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 10240486 - 10240445
Alignment:
Q  162 ttgtgaatttggtaactccaaatctcacatcaatgaaattta 203  Q
    ||||||||| ||||||||||||| ||||||||||| ||||||    
T  10240486 ttgtgaattcggtaactccaaatttcacatcaatgtaattta 10240445  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 20684851 - 20684887
Alignment:
Q  167 aatttggtaactccaaatctcacatcaatgaaattta 203  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  20684851 aatttggtaactcaaaatctcacatcaatgaagttta 20684887  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 205
Target Start/End: Complemental strand, 317131 - 317096
Alignment:
Q  170 ttggtaactccaaatctcacatcaatgaaatttaga 205  Q
    |||| |||||||||||||||||||||||||||||||    
T  317131 ttggaaactccaaatctcacatcaatgaaatttaga 317096  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 4160963 - 4160920
Alignment:
Q  162 ttgtgaatttggtaactccaaatctcacatcaatgaaatttaga 205  Q
    |||| |||||||||||||||||||||||||||||  ||||||||    
T  4160963 ttgtaaatttggtaactccaaatctcacatcaatataatttaga 4160920  T

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