View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3872_low_5 (Length: 518)
Name: NF3872_low_5
Description: NF3872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3872_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 9 - 283
Target Start/End: Original strand, 4661595 - 4661869
Alignment:
| Q |
9 |
agcataggctgagtcaacaggtttggaccagaagcaaataaataactggttcataaatcaaaggaagaggcactggaaaccatcagaagacatgcagttt |
108 |
Q |
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| T |
4661595 |
agcattggctgagtcaacaggtttggaccagaagcaaataaataactggttcataaatcaaaggaagaggcactggaaaccatcagaagacatgcagttt |
4661694 |
T |
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| Q |
109 |
atggtgatggatggactgcatccacagagtgcagctctttatatggatggtcattacatggctgatggtccctaccgtttagggccatgattatgatata |
208 |
Q |
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| T |
4661695 |
atggtgatggatggactgcatccacagagtgcagctctttatatggatggtcattacatggctgatggtccctaccgtttagggccatgattatgatata |
4661794 |
T |
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| Q |
209 |
tgaagcgttgacactgacacatcgacaccaatgtcggcgtggtggtcggacttatcttcaatattatgaccactt |
283 |
Q |
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| T |
4661795 |
tgaagcgttgacactggcacatcgacaccaatgtcggcgtggtggtcggacttatcttcaatattatgaccactt |
4661869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 304 - 503
Target Start/End: Original strand, 4661905 - 4662104
Alignment:
| Q |
304 |
gtttaagtggaaggtgaaacaatcaaagactgtttaaactgtatcagtcagcattatatttacatatagttctagtttcaaagtattatgacaagcatag |
403 |
Q |
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| T |
4661905 |
gtttaagtggaaggtgaaacaatcaaagactgtttaaactgtatcagtcagcattatatttatatatagttctagtttcaaagtattatgacaagcataa |
4662004 |
T |
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| Q |
404 |
tatgaaacttggttatgcttgtgcagtgtgaatgtttcagtttttcccatattaattgttttctttgtcagtgtctgttgcttctattgtccatgtaatt |
503 |
Q |
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| T |
4662005 |
catgaaacttggttatgcttgtgcagtgtgaatgtttcagtttttcccatattaattgttttctttgtcagtgtctgttgcttctattttccatgtaatt |
4662104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 37489300 - 37489242
Alignment:
| Q |
40 |
aagcaaataaataactggttcataaatcaaaggaagaggcactggaaaccatcagaaga |
98 |
Q |
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| T |
37489300 |
aagcagataaataattggttcatcaatcagaggaaaagacactggaaaccatctgaaga |
37489242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 22 - 120
Target Start/End: Complemental strand, 8791989 - 8791891
Alignment:
| Q |
22 |
tcaacaggtttggaccagaagcaaataaataactggttcataaatcaaaggaagaggcactggaaaccatcagaagacatgcagtttatggtgatggat |
120 |
Q |
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| T |
8791989 |
tcaacaggtcttgatcagaagcaaataaacaactggtttattaatcaaaggaaacggcactggaagccttcagaggacatgcagtttgtggtgatggat |
8791891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 37 - 120
Target Start/End: Complemental strand, 8780481 - 8780396
Alignment:
| Q |
37 |
cagaagcaaataaataactggttcat--aaatcaaaggaagaggcactggaaaccatcagaagacatgcagtttatggtgatggat |
120 |
Q |
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| T |
8780481 |
cagaagcaaataaacaactggtttattaaaatcaaagaaaacggcactggaagccttcagaggacatgcagtttgtggtgatggat |
8780396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 48282138 - 48282094
Alignment:
| Q |
40 |
aagcaaataaataactggttcataaatcaaaggaagaggcactgg |
84 |
Q |
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| T |
48282138 |
aagcaaataaataactggtttattaatcaaaggaaaaggaactgg |
48282094 |
T |
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