View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3872_low_8 (Length: 452)
Name: NF3872_low_8
Description: NF3872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3872_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 19 - 445
Target Start/End: Complemental strand, 182707 - 182281
Alignment:
| Q |
19 |
tgccaggcacaaatcctgtccacctgcaatgttgcaagaaccatgtgacaaaactgagtaacctgaaagaacaaatataggaatttgaaagcagcgggtc |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
182707 |
tgccaggcacaaatcctgtccacctgcaatgttgcaagaaccatgtgacaaaactgaataacctgaaagaacaaatattggaatttgaaagcagcgggtc |
182608 |
T |
|
| Q |
119 |
ataaaagtggaatagtgactcaccttattcaatgcaacaatgaattgtgtgttcctcgtttttagtagacggaatgactctacagtttctgggtctaagc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
182607 |
ataaaagtggaatagtgactcaccttattcaatgcaacaatgaattgtgtgttcctcgtttttagtagacggaatgactctacagtttctgggtctaagc |
182508 |
T |
|
| Q |
219 |
catgcataatatctacaaccaaaattgcaatatcacatagacttgaaccccaagaaattgagttattgaatgattggtggcctggggtatcaataaccag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
182507 |
catgcataatatctacaaccaaaattgcaatatcacatagacttgaaccccaagaaattgagttattgaatgattggtggcctggggtatcaataaccag |
182408 |
T |
|
| Q |
319 |
tagacgcctacttccatggacaggaaagtatgttgtgccactctgttggttgataccgccttcttgaaaattgttacctcgaataccacccagaagcttg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
182407 |
tagacgcctacttccatggacaggaaagtatgttgtgccactctgttggtcgataccgccttcttgaaaattgttacctcgaataccacccagaagcttg |
182308 |
T |
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| Q |
419 |
gtttttccagtgttgacatcacctatg |
445 |
Q |
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| T |
182307 |
gtttttccagtgttgacatcacctatg |
182281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 593426 - 593520
Alignment:
| Q |
19 |
tgccaggcacaaatcctgtccacctgcaatgttgcaagaaccatgtgacaaaactgagtaacct-gaaagaacaaatataggaatttgaaagcag |
112 |
Q |
| |
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||||||||||||||||| ||||||| ||||||||||| ||| ||||||||||||||||||| | ||||||||||||| ||| |||| |||||| |
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| T |
593426 |
tgccaggcacaaatcctatccacctacaatgttgcaacaacagtgtgacaaaactgagtaacttataaagaacaaatattggattttgcaagcag |
593520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 216 - 298
Target Start/End: Original strand, 29220230 - 29220313
Alignment:
| Q |
216 |
agccatgcataatatctacaaccaaaattgcaatatca-catagacttgaaccccaagaaattgagttattgaatgattggtgg |
298 |
Q |
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||||| ||||||| | ||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||| |
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| T |
29220230 |
agccacgcataatgttaacaaccaaaattgcaatatcaacatagacttgaaccccaaaaatgggagttattgaatgattggtgg |
29220313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 266
Target Start/End: Original strand, 593528 - 593657
Alignment:
| Q |
137 |
ctcaccttattcaatgcaacaatgaattgtgtgttcctcgtttttagtagacggaatgactctacagtttctgggtctaagccatgcataatatctacaa |
236 |
Q |
| |
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|||||||||||||| ||| ||||| | |||||| || |||||| |||| || ||| |||| ||||| | | | || |||||||||||| ||||||| |
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| T |
593528 |
ctcaccttattcaagacaatgatgaagtctgtgttggtcctttttaatagatcgagtgaatctatagtttgttgctgtatgccatgcataatgtctacaa |
593627 |
T |
|
| Q |
237 |
ccaaaattgcaatatcacatagacttgaac |
266 |
Q |
| |
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|||||||||| ||||||||||||| ||||| |
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| T |
593628 |
ccaaaattgcgatatcacatagacctgaac |
593657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 389 - 445
Target Start/End: Complemental strand, 3014042 - 3013986
Alignment:
| Q |
389 |
ttgttacctcgaataccacccagaagcttggtttttccagtgttgacatcacctatg |
445 |
Q |
| |
|
|||||||||||||||| ||| |||||| ||||||| ||||||| ||||||||||| |
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|
| T |
3014042 |
ttgttacctcgaatacaaccgagaagcgtggttttgccagtgtacgcatcacctatg |
3013986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 3014173 - 3014133
Alignment:
| Q |
219 |
catgcataatatctacaaccaaaattgcaatatcacataga |
259 |
Q |
| |
|
|||||||||| || ||||||||||| ||||||||||||||| |
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|
| T |
3014173 |
catgcataatgtcaacaaccaaaatagcaatatcacataga |
3014133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 136 - 323
Target Start/End: Complemental strand, 44605138 - 44604951
Alignment:
| Q |
136 |
actcaccttattcaatgcaacaatgaattgtgtgttcctcgtttttagtagacggaatgactctacagtttctgggtctaagccatgcataatatctaca |
235 |
Q |
| |
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|||||||||||| |||||||||||||| | |||||||||| |||||| |||| || |||||||| ||||| ||| ||||||||||||||||| || ||| |
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| T |
44605138 |
actcaccttatttaatgcaacaatgaactctgtgttcctcatttttaatagattgagtgactctatagtttgtggctctaagccatgcataatgtcaaca |
44605039 |
T |
|
| Q |
236 |
accaaaattgcaatatcacatagacttgaaccccaagaaattgagttattgaatgattggtggcctggggtatcaataaccagtagac |
323 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||| || ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44605038 |
accaaaattgcaatatcacatagacctgaaccccgagaccttaagttattgaatgattcgtggcctggggtatcaataaccagtagac |
44604951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 137 - 323
Target Start/End: Complemental strand, 44626902 - 44626716
Alignment:
| Q |
137 |
ctcaccttattcaatgcaacaatgaattgtgtgttcctcgtttttagtagacggaatgactctacagtttctgggtctaagccatgcataatatctacaa |
236 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||| |||||| |||| || |||||||| ||||| ||| ||||||||||||||||| || |||| |
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| T |
44626902 |
ctcaccttattcaatgcaacgatgaattcagtgttcctcatttttaatagattgagtgactctatagtttgtggctctaagccatgcataatgtccacaa |
44626803 |
T |
|
| Q |
237 |
ccaaaattgcaatatcacatagacttgaaccccaagaaattgagttattgaatgattggtggcctggggtatcaataaccagtagac |
323 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||| | ||||||||||||| | ||| ||||||||||||||||||||||||| |
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| T |
44626802 |
ccaaaattgcaatatcacatagacctgaaccccgagacctcaagttattgaatgactcgtgtcctggggtatcaataaccagtagac |
44626716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 431
Target Start/End: Complemental strand, 44626608 - 44626554
Alignment:
| Q |
377 |
ccttcttgaaaattgttacctcgaataccacccagaagcttggtttttccagtgt |
431 |
Q |
| |
|
|||||||||| |||| |||||||||| | | |||||||||||||||| ||||||| |
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|
| T |
44626608 |
ccttcttgaacattggtacctcgaatgcaatccagaagcttggttttgccagtgt |
44626554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 40672520 - 40672570
Alignment:
| Q |
219 |
catgcataatatctacaaccaaaattgcaatatcacatagacttgaacccc |
269 |
Q |
| |
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|||||||||| || ||||||||||| ||||||||||||||| |||||||| |
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|
| T |
40672520 |
catgcataatgtcaacaaccaaaatagcaatatcacatagatatgaacccc |
40672570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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