View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3872_low_9 (Length: 450)
Name: NF3872_low_9
Description: NF3872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3872_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 19 - 439
Target Start/End: Complemental strand, 54819599 - 54819183
Alignment:
| Q |
19 |
caatctacaacaagcttgttgagaaagctaaggaagaaggctatgatgtgagtaaattgcacaagactccacagagtgatcctccacctgagtaagatga |
118 |
Q |
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| T |
54819599 |
caatctacaaccagcttgttgagaaagctaaggaagaaggctatgatgtgagtaaattgcacaagactccacagagtgatcctccacctgagtaagatga |
54819500 |
T |
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| Q |
119 |
aggtcctcaagacacaaatgcctgtttgggaaataaattaataaataaataattatggtcatgacatgaacaatattatgtaatcaggctgaagaagtgt |
218 |
Q |
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| T |
54819499 |
aggtcctcaagacacaaatgcctgtttgggaaataaat----aaataaatagttatggtcatgacatgaacaatattatgtaatcaggctgaagaagtgt |
54819404 |
T |
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| Q |
219 |
taatttcaagtcataaataatatggatcaatttagtttggatatatttgtaaattgtaatgcgtgtattggtttgttctgtaaacaaactatacataagt |
318 |
Q |
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| T |
54819403 |
taatttcaagtcataaataatatggatcaatttagttgggatatatttgtaaattgtaatgcgtgtattggtttgttctgtaaacaaactatagataagt |
54819304 |
T |
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| Q |
319 |
tggtatttgatactcaaattgtgtaaggagttgttaacttattgttggtgagaatcaatgtttgatattctactccaaagattagttgtttacttttcct |
418 |
Q |
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| T |
54819303 |
tggtatttgatactcaaattgtgtaaggagttgttaacttattgttggtgagaatcaatgtttgatattctactccaaagattagttgtttacttttcct |
54819204 |
T |
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| Q |
419 |
ttttcgttgttgaatatctct |
439 |
Q |
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| T |
54819203 |
ttttcgttgttgaatatctct |
54819183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 54816610 - 54816515
Alignment:
| Q |
20 |
aatctacaacaagcttgttgagaaagctaaggaagaaggctatgatgtgagtaaattgcacaagactccacagagtgatcctccacctgagtaaga |
115 |
Q |
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| T |
54816610 |
aatctacaacgagcttgttcagaaagctaaggaagaagggtatgatgtgagcaaactgcgcaagactccacaaagtgatactccacctgagcaaga |
54816515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 23 - 116
Target Start/End: Complemental strand, 54848645 - 54848552
Alignment:
| Q |
23 |
ctacaacaagcttgttgagaaagctaaggaagaaggctatgatgtgagtaaattgcacaagactccacagagtgatcctccacctgagtaagat |
116 |
Q |
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| T |
54848645 |
ctacaacaaacttgttcagaaagctaaggatgacgggtatgatgtgaccaaattgcacaagactccgcagagtaatcctccacctcagtaagat |
54848552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 113
Target Start/End: Original strand, 35801041 - 35801131
Alignment:
| Q |
23 |
ctacaacaagcttgttgagaaagctaaggaagaaggctatgatgtgagtaaattgcacaagactccacagagtgatcctccacctgagtaa |
113 |
Q |
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||||||||||||||| ||||| ||||||| || || ||||||| || |||||||||||||||||||||||| | ||||||||| ||||| |
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| T |
35801041 |
ctacaacaagcttgtgcagaaaactaaggatgacgggtatgatgcgaccaaattgcacaagactccacagagtaaacctccacctcagtaa |
35801131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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