View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3873_low_1 (Length: 624)

Name: NF3873_low_1
Description: NF3873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3873_low_1
NF3873_low_1
[»] chr5 (2 HSPs)
chr5 (16-607)||(1559369-1559960)
chr5 (392-447)||(683410-683465)
[»] chr4 (1 HSPs)
chr4 (422-531)||(16494493-16494602)
[»] chr6 (5 HSPs)
chr6 (394-448)||(22994088-22994142)
chr6 (394-448)||(23794256-23794310)
chr6 (426-533)||(1896195-1896301)
chr6 (393-445)||(19050520-19050572)
chr6 (500-532)||(25417003-25417035)
[»] chr2 (2 HSPs)
chr2 (448-533)||(35994129-35994213)
chr2 (397-446)||(23058332-23058381)
[»] chr1 (2 HSPs)
chr1 (426-522)||(6556608-6556704)
chr1 (394-446)||(26392975-26393027)
[»] scaffold0013 (1 HSPs)
scaffold0013 (494-530)||(60152-60188)
[»] chr8 (1 HSPs)
chr8 (418-592)||(32659790-32659965)


Alignment Details
Target: chr5 (Bit Score: 564; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 16 - 607
Target Start/End: Complemental strand, 1559960 - 1559369
Alignment:
Q  16 atacagaaaattgagtgatcaaccttgtcaaactcgagaatctagctaaactcgtggagcctccgtagactcgactcctaaacttgtaatagtttgccta 115  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1559960 atacagaaaattgagtgatcaaccttgtcaaattcgagagtctagctaaactcgtggagcctccgtagactcgaatcctaaacttgtaatagtttgccta 1559861  T
Q  116 aattacaacggttatacacattatcaacgagaaactacctgcaactaaattgtaattaattccaagctattgtgacaaactaatcctagttacaattaat 215  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1559860 aattacaacggttatacacattatcaacgagaaactacctgtaactaaattgtaattaattccaagctattgtgacaaactaatcctagttacaattaat 1559761  T
Q  216 attaacattatcaacaagaccaatgattagtagaacaatcgtatcatgcactaacataatcaaaatcaaaatcaaaatcagacgatttttaacgcattca 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1559760 attaacattatcaacaagaccaatgattagtagaacaatcgtatcatgtactaacataatcaaaatcaaaatcaaaatcagacgatttttaacgcattca 1559661  T
Q  316 gagaaagagctacatataccacacgagtaatccaccaaattagtccctgatgttgtagagcgctctcaaacaggacctgactctattaatctgtccagtt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1559660 gagaaagagctacatataccacacgagtaatccaccaaattagtccctgatgttgtagagcgctctcaaacaggacctgactctattaatctgtccagtt 1559561  T
Q  416 gattcttatatttaaccacttactatcaattagtctctacatttaaccgcttactgacaatttagtcccttaacatattctcataatgactaatatgagt 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1559560 gattcttatatttaaccacttactatcaattagtctctacatttaaccgcttactgacaatttagtcccttaacatattctcataatgactaatatgagt 1559461  T
Q  516 aaaatttgacagagtcgacgaacttgatgaattattcataatctcagtgacatagttgtgaacgtcctacaaagtcaatcaatgacataaat 607  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1559460 aaaatttgacagagtcggcgaacttgatgaattattcataatctcagggacatagttgtgaacgtcctacaaagtcaatcaatgacataaat 1559369  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 392 - 447
Target Start/End: Original strand, 683410 - 683465
Alignment:
Q  392 ctgactctattaatctgtccagttgattcttatatttaaccacttactatcaatta 447  Q
    |||||||||||||  |||| ||||||| |||||||||||||||||| |||||||||    
T  683410 ctgactctattaaattgtcaagttgatccttatatttaaccacttattatcaatta 683465  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 422 - 531
Target Start/End: Original strand, 16494493 - 16494602
Alignment:
Q  422 tatatttaaccacttactatcaatta-gtctctacatttaaccgcttactgacaatttagtcccttaacatattctcataatgactaatatgagtaaaat 520  Q
    |||||||||| ||||||||||||||  ||| ||  |||||||||||||||  |||||||||| || |||||| |||  |||||||| |||||||||||||    
T  16494493 tatatttaacaacttactatcaattttgtcgctgtatttaaccgcttactatcaatttagtctct-aacatactcttgtaatgacttatatgagtaaaat 16494591  T
Q  521 ttgacagagtc 531  Q
    || ||| ||||    
T  16494592 ttcacatagtc 16494602  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 448
Target Start/End: Original strand, 22994088 - 22994142
Alignment:
Q  394 gactctattaatctgtccagttgattcttatatttaaccacttactatcaattag 448  Q
    ||||||||||| ||||| ||||||| |||||||||||| | ||||||||||||||    
T  22994088 gactctattaaactgtcaagttgatccttatatttaactatttactatcaattag 22994142  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 448
Target Start/End: Complemental strand, 23794310 - 23794256
Alignment:
Q  394 gactctattaatctgtccagttgattcttatatttaaccacttactatcaattag 448  Q
    ||||||||||| ||||| ||||||| |||||||||||| | ||||||||||||||    
T  23794310 gactctattaaactgtcaagttgatccttatatttaactatttactatcaattag 23794256  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 426 - 533
Target Start/End: Original strand, 1896195 - 1896301
Alignment:
Q  426 tttaaccacttactatcaattag-tctctacatttaaccgcttactgacaatttagtcccttaacatattctcataatgactaatatgagtaaaatttga 524  Q
    |||||| |||||||||||||| | ||||||  |||| ||| ||||| ||||||||||||| |||||||||||   || || |||||||||| |||||| |    
T  1896195 tttaactacttactatcaatttggtctctaagtttatccgattactaacaatttagtccc-taacatattctttaaaggattaatatgagt-aaatttaa 1896292  T
Q  525 cagagtcga 533  Q
    |||||||||    
T  1896293 cagagtcga 1896301  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 393 - 445
Target Start/End: Complemental strand, 19050572 - 19050520
Alignment:
Q  393 tgactctattaatctgtccagttgattcttatatttaaccacttactatcaat 445  Q
    ||||||||||||  |||| ||||  | ||||||||||||||||||||||||||    
T  19050572 tgactctattaaattgtcaagttcgtccttatatttaaccacttactatcaat 19050520  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 500 - 532
Target Start/End: Original strand, 25417003 - 25417035
Alignment:
Q  500 aatgactaatatgagtaaaatttgacagagtcg 532  Q
    ||||||||||||| |||||||||||||||||||    
T  25417003 aatgactaatatgtgtaaaatttgacagagtcg 25417035  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 448 - 533
Target Start/End: Original strand, 35994129 - 35994213
Alignment:
Q  448 gtctctacatttaaccgcttactgacaatttagtcccttaacatattctcataatgactaatatgagtaaaatttgacagagtcga 533  Q
    |||||||  ||||||| ||||||  |||||||||| || |||||| | ||| |||||| |||||||| ||||||||||||||||||    
T  35994129 gtctctatttttaaccacttactatcaatttagtctct-aacatactttcaaaatgacaaatatgagcaaaatttgacagagtcga 35994213  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 446
Target Start/End: Original strand, 23058332 - 23058381
Alignment:
Q  397 tctattaatctgtccagttgattcttatatttaaccacttactatcaatt 446  Q
    |||||||||||||  ||||| | | |||||||||||||||||||||||||    
T  23058332 tctattaatctgttaagttggtccctatatttaaccacttactatcaatt 23058381  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 426 - 522
Target Start/End: Original strand, 6556608 - 6556704
Alignment:
Q  426 tttaaccacttactatcaa-ttagtctctacatttaaccgcttactgacaatttagtcccttaacatattctcataatgactaatatgagtaaaattt 522  Q
    |||||| |||||||||||| || || | || |||||||||||||||  |||||||||| || | |||| ||||  |||||||||||||||||||||||    
T  6556608 tttaacaacttactatcaacttggtttttatatttaaccgcttactatcaatttagtctct-agcatactctcggaatgactaatatgagtaaaattt 6556704  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 394 - 446
Target Start/End: Original strand, 26392975 - 26393027
Alignment:
Q  394 gactctattaatctgtccagttgattcttatatttaaccacttactatcaatt 446  Q
    ||||||||||| ||||| ||||| | | |||||||||||| ||||||||||||    
T  26392975 gactctattaaactgtcaagttggtccctatatttaaccatttactatcaatt 26393027  T

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Target: scaffold0013 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 494 - 530
Target Start/End: Original strand, 60152 - 60188
Alignment:
Q  494 tctcataatgactaatatgagtaaaatttgacagagt 530  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  60152 tctcaaaatgactaatatgagtaaaatttgatagagt 60188  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 418 - 592
Target Start/End: Original strand, 32659790 - 32659965
Alignment:
Q  418 ttcttatattt-aaccacttactatcaa-ttagtctctacatttaaccgcttactgacaatttagtcccttaacatattctcataatgactaatatgagt 515  Q
    ||||||||||| ||| |||||||||||| || |||||||  ||||||| || |||  ||||||||| ||| |||||| ||||| ||  |||||||||  |    
T  32659790 ttcttatattttaacaacttactatcaacttggtctctatgtttaacccctcactatcaatttagttcct-aacataatctcagaagaactaatatgcct 32659888  T
Q  516 aaaatttgacagagtcgacgaacttgatgaattattcataatctcagtgacatagttgtgaacgtcctacaaagtca 592  Q
     ||||||||||||||| | || |||  | || |||||||||||  || ||| || ||| || |||| ||||||||||    
T  32659889 caaatttgacagagtcaatgacctttgtaaaatattcataatcctagagacctatttgagagcgtcatacaaagtca 32659965  T

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