View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3873_low_3 (Length: 276)
Name: NF3873_low_3
Description: NF3873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3873_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 40111897 - 40111655
Alignment:
| Q |
19 |
attaacgacatgcttaagggatttgagttccttaccacttggaccaattcattgttgattaatcttaatatgcttttctaatcgtggcttttgtagaaga |
118 |
Q |
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| T |
40111897 |
attaacgacatgcttaagggatttgagttccttaccacttggaacaattcattgttgattaatcttaatatgcttttctaatcgtggcttttgtagaaga |
40111798 |
T |
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| Q |
119 |
aagaagtctgtattatttgtatctctcaataccatatgaaaaattttggatttttccatggggttattttggatatttaatagaacgtatacattgttta |
218 |
Q |
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| T |
40111797 |
aagaagtctgtattatttgtatctctaaataccatatgaaaaattttggatttttccatggggttattttggatatttaatagaacgtatacattgttta |
40111698 |
T |
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| Q |
219 |
ttagtgtgggtggatccttggttccactcgaaagtatgtgtat |
261 |
Q |
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| T |
40111697 |
ttagtgtgggtggatccttggttccactcgaaagtatgtgtat |
40111655 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 43460271 - 43460320
Alignment:
| Q |
26 |
acatgcttaagggatttgagttccttaccacttggaccaattcattgttg |
75 |
Q |
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| T |
43460271 |
acatgcttaaggggttcaagtcccttaccacttggaccaatccattgttg |
43460320 |
T |
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