View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3873_low_4 (Length: 246)
Name: NF3873_low_4
Description: NF3873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3873_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 11654017 - 11654241
Alignment:
| Q |
1 |
aatggctcaaataatggttcaagttttggtgtcaatcttgcttgtactagtggcagtggaagcagctactcctcctggaattgctaaagatcatgaatat |
100 |
Q |
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| T |
11654017 |
aatggctcaaataatggttcaagttttggtgtcaatcttgcttgtgctagtggcagtggaagcagctactcctcctggaattgctaaagatcatgaatat |
11654116 |
T |
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| Q |
101 |
ggccatgcaagctgcaagataaagaaatacaaacattgctataatttggttcatgtatgccctaagttttgccctaatgattgtactgtggagtgtgcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11654117 |
ggccatgcaagctgcaagataaagaaatacaaacattgctataatttggttcatgtatgccctaagttttgccctaatgattgtactgtggagtgtgcct |
11654216 |
T |
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| Q |
201 |
cttgcaaacctatttgtgttggggg |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
11654217 |
cttgcaaacctatttgtgttggggg |
11654241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 11667782 - 11668006
Alignment:
| Q |
1 |
aatggctcaaataatggttcaagttttggtgtcaatcttgcttgtactagtggcagtggaagcagctactcctcctggaattgctaaagatcatgaatat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11667782 |
aatggctcaaataatggttcaagttttggtgtcaatcttgcttgtgctagtggcagtggaagcagctactcctcctggaattgctaaagatcatgagtat |
11667881 |
T |
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| Q |
101 |
ggccatgcaagctgcaagataaagaaatacaaacattgctataatttggttcatgtatgccctaagttttgccctaatgattgtactgtggagtgtgcct |
200 |
Q |
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| T |
11667882 |
ggccatgcaagctgtaagataaagaaatacaaacattgctataatttggttcatgtatgccctaagttttgccctaatgattgtactgtggagtgtgcct |
11667981 |
T |
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| Q |
201 |
cttgcaaacctatttgtgttggggg |
225 |
Q |
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| T |
11667982 |
cttgcaaacctatttgtgttggggg |
11668006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 11663397 - 11663612
Alignment:
| Q |
1 |
aatggctcaaataatggttcaagttttggtgtcaatcttgcttgtactagtggcagtggaagcagctactcctcctggaattgctaaagatcatgaatat |
100 |
Q |
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||||||| ||||| | |||||| ||||||||||||| |||||||| ||| |||||||||||||||||| ||||||||||| |||||||| || || || |
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| T |
11663397 |
aatggctaaaatattagttcaaattttggtgtcaattttgcttgtgctaatggcagtggaagcagctagtcctcctggaaatgctaaaggtcgtgggaat |
11663496 |
T |
|
| Q |
101 |
ggccatgcaagctgcaagataaagaaatacaaacattgctataatttggttcatgtatgccctaagttttgccctaatgattgtactgtggagtgtgcct |
200 |
Q |
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| T |
11663497 |
ggttatgcaacctgcaagataaagaagtacaaacattgctataattcggttcatgtatgtcctaagtcttgtccttatgattgtactgtggagtgtgcct |
11663596 |
T |
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| Q |
201 |
cttgcaaacctatttg |
216 |
Q |
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|||||||||||||||| |
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| T |
11663597 |
cttgcaaacctatttg |
11663612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 7345073 - 7344855
Alignment:
| Q |
1 |
aatggctcaaataatggttcaagttttggtgtcaatcttgct---tgtactagtggcagtggaagcagctactcctcctggaattgctaaagatcatgaa |
97 |
Q |
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||||||| || ||||||||||| |||||||||||| | || ||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7345073 |
aatggctaaattaatggttcaaactttggtgtcaataattctccttgtgctagtggcagtggaagcagctactcctcctggaattgctaaagatcgtgag |
7344974 |
T |
|
| Q |
98 |
tatggccatgcaagctgcaagataaagaaatacaaacattgctataatttggttcatgtatgccctaagttttgccctaatgattgtactgtggagtgtg |
197 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||| ||||||||| ||| ||||||| ||| ||| ||||||| ||||||||||||| |
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| T |
7344973 |
catggttatgcaagctgcaagataaagaagtacaaacattgctataatatggttcatgcatgtcctaagtcttgtccttatgattgcactgtggagtgtg |
7344874 |
T |
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| Q |
198 |
cctcttgcaaacctatttg |
216 |
Q |
| |
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| ||||||||||| ||||| |
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| T |
7344873 |
cttcttgcaaaccaatttg |
7344855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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