View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3874_high_4 (Length: 384)
Name: NF3874_high_4
Description: NF3874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3874_high_4 |
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| [»] chr8 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 384
Target Start/End: Complemental strand, 12933984 - 12933828
Alignment:
| Q |
228 |
tcatgaatgaatcaaacttcatgtaccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-cta |
326 |
Q |
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| T |
12933984 |
tcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtctt |
12933885 |
T |
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| Q |
327 |
cttcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaa |
384 |
Q |
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| T |
12933884 |
ct-caaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaa |
12933828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 36999974 - 36999937
Alignment:
| Q |
341 |
ggttgctccatataaatctcctcttccaaatctccatg |
378 |
Q |
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| T |
36999974 |
ggttgctccatataaatctcctcttccaagtcaccatg |
36999937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 384
Target Start/End: Original strand, 28608621 - 28608777
Alignment:
| Q |
228 |
tcatgaatgaatcaaacttcatgtaccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-cta |
326 |
Q |
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| T |
28608621 |
tcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtctt |
28608720 |
T |
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| Q |
327 |
cttcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaa |
384 |
Q |
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| T |
28608721 |
ctt-aaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaa |
28608777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 384
Target Start/End: Complemental strand, 14177231 - 14177098
Alignment:
| Q |
251 |
taccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctcc |
349 |
Q |
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| T |
14177231 |
taccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttct-caaatccttctggttgaacc |
14177133 |
T |
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| Q |
350 |
atataaatctcctcttccaaatctccatgaagaaa |
384 |
Q |
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| T |
14177132 |
atgtagatctcttcatctaaatctccatgaagaaa |
14177098 |
T |
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