View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3874_low_1 (Length: 242)
Name: NF3874_low_1
Description: NF3874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3874_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 33592120 - 33592345
Alignment:
| Q |
1 |
tttttatgatgtgtcattctttgattggatgagaccatatcctatttgttggtcatgagaccaaccaagaattgctagaatagttatgcagatttagtag |
100 |
Q |
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| T |
33592120 |
tttttatgatgtgtcatgctttgattggatgagaccatatcctatttgttggtcatgagaccaaccaagaattgctagaatagttatgcagatttagtag |
33592219 |
T |
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| Q |
101 |
tagatgatgacacttaccgcattgatgtcgccggaaacaacaactaagatggagacgatgatgacgacgacagtgacaaccttggtctcgtcggaaacaa |
200 |
Q |
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| T |
33592220 |
tcgatgatgacactcaccgcattgatgtcgccggaaacaacaactaagatggagacgatgacgacgacgacagtgacaaccttggtctcgccggaaacaa |
33592319 |
T |
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| Q |
201 |
caaaatgacgacgaagacaacatata |
226 |
Q |
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| T |
33592320 |
caaaatgacgacgaagacaacatata |
33592345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 33599251 - 33599476
Alignment:
| Q |
1 |
tttttatgatgtgtcattctttgattggatgagaccatatcctatttgttggtcatgagaccaaccaagaattgctagaatagttatgcagatttagtag |
100 |
Q |
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| T |
33599251 |
tttttatgatgtgtcatgctttgattggatgagaccatatcctatttgttggtcatgagaccaaccaagaattgctagaatagttatgcagatttagtag |
33599350 |
T |
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| Q |
101 |
tagatgatgacacttaccgcattgatgtcgccggaaacaacaactaagatggagacgatgatgacgacgacagtgacaaccttggtctcgtcggaaacaa |
200 |
Q |
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| T |
33599351 |
tcgatgatgacactcaccgcattgatgtcgccggaaacaacaactaagatggagacgatgacgacgacgacagtgacaaccttggtctcgccggaaacaa |
33599450 |
T |
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| Q |
201 |
caaaatgacgacgaagacaacatata |
226 |
Q |
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| T |
33599451 |
caaaatgacgacgaagacaacatata |
33599476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 131 - 226
Target Start/End: Original strand, 33585166 - 33585261
Alignment:
| Q |
131 |
ccggaaacaacaactaagatggagacgatgatgacgacgacagtgacaaccttggtctcgtcggaaacaacaaaatgacgacgaagacaacatata |
226 |
Q |
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||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
33585166 |
ccggaaacagcaactaagacggagacgatgatgacgacgacagtggcaaccttggtcttgctggaaacaacaaaatgacgacgaagacaacatata |
33585261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 33585748 - 33585814
Alignment:
| Q |
7 |
tgatgtgtcattctttgattggatgagaccatatcctatttgttggtcatgagaccaaccaagaatt |
73 |
Q |
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| T |
33585748 |
tgatgtgtcatgctttggttggatgtgaccaaatcccatttgctggtcatgtgaccaactaagaatt |
33585814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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