View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3875_high_10 (Length: 248)
Name: NF3875_high_10
Description: NF3875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3875_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 32503016 - 32503179
Alignment:
| Q |
1 |
aataaaccactatgcctaaacattttaaaggctccctttttaacttctctataaatacatataaccttataagggcttttcctcaagttaaaaactaaat |
100 |
Q |
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| T |
32503016 |
aataaaccactatgcctaaacattttaaaggctccctttttaacttctgtataaatacatataaccttataagggcttttcctcgagttaaaaactaaat |
32503115 |
T |
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| Q |
101 |
acttatggcagttgagttgagaggcttccaaaagctagaaactaatccaactagatcatcacat |
164 |
Q |
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| T |
32503116 |
acttatggcagttgagttgagaggcttccaaaagctagagactaatccaactagatcatcacat |
32503179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 32503349 - 32503415
Alignment:
| Q |
158 |
atcacattatcattatcgtaaaaaattaactnnnnnnnntcaaattcaaagcttcataaattgaaacat |
226 |
Q |
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| T |
32503349 |
atcacattatcattatcgtaaaaaattaact--aaaaaatcaaattcaaagcttcaaaaattgaaacat |
32503415 |
T |
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