View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3875_high_12 (Length: 239)

Name: NF3875_high_12
Description: NF3875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3875_high_12
NF3875_high_12
[»] chr7 (10 HSPs)
chr7 (25-239)||(1449691-1449905)
chr7 (25-205)||(21823347-21823526)
chr7 (24-170)||(24881473-24881618)
chr7 (161-239)||(1449648-1449726)
chr7 (158-239)||(24881686-24881768)
chr7 (158-239)||(24881730-24881811)
chr7 (161-239)||(1449606-1449683)
chr7 (158-237)||(24881642-24881722)
chr7 (166-205)||(1449597-1449636)
chr7 (23-85)||(14609126-14609188)
[»] chr1 (8 HSPs)
chr1 (25-239)||(8542129-8542343)
chr1 (25-239)||(8607368-8607582)
chr1 (17-81)||(36301832-36301897)
chr1 (161-205)||(8542120-8542164)
chr1 (161-205)||(8607359-8607403)
chr1 (161-201)||(20956502-20956542)
chr1 (161-201)||(22836786-22836826)
chr1 (161-201)||(27673440-27673480)
[»] chr3 (3 HSPs)
chr3 (17-239)||(547244-547463)
chr3 (161-201)||(11883798-11883838)
chr3 (162-202)||(17523939-17523979)
[»] scaffold0118 (3 HSPs)
scaffold0118 (24-239)||(10124-10336)
scaffold0118 (160-205)||(10386-10431)
scaffold0118 (160-239)||(10343-10422)
[»] chr6 (1 HSPs)
chr6 (11-168)||(194874-195028)
[»] chr4 (3 HSPs)
chr4 (27-205)||(16289072-16289247)
chr4 (161-201)||(43282918-43282958)
chr4 (161-201)||(52267001-52267041)
[»] chr8 (3 HSPs)
chr8 (161-239)||(3929220-3929299)
chr8 (162-205)||(3929169-3929212)
chr8 (158-239)||(3929178-3929258)
[»] scaffold0150 (2 HSPs)
scaffold0150 (161-201)||(20289-20329)
scaffold0150 (161-201)||(27118-27158)
[»] scaffold0090 (1 HSPs)
scaffold0090 (161-201)||(6179-6219)
[»] chr5 (1 HSPs)
chr5 (161-201)||(5452348-5452388)


Alignment Details
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 25 - 239
Target Start/End: Complemental strand, 1449905 - 1449691
Alignment:
Q  25 catgttgataactatagatgattctaaaaatggcttgtggttcataaaatattagaggttggtcggttgcatttcatggtcttatttttggatattttgt 124  Q
    |||||||||||||||| ||||||| |||||||  || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1449905 catgttgataactatatatgattccaaaaatgatttttggttcataaaatattagaggttggtcggttgtatttcatggtcttatttttggatattttgt 1449806  T
Q  125 tgataacattgagtcgcatggcatatcatggagtatttgggctacggccttgcagagaccatttagggatctagttttatttgggctacgg-cttgctga 223  Q
    |||| |||||||||||||   ||||||||| ||| ||||| ||||||||||||||||| ||||||| | | |||||||| ||||||||||| ||||| ||    
T  1449805 tgatgacattgagtcgcaaaacatatcatgaagtctttggactacggccttgcagagatcatttagtggtttagtttta-ttgggctacggtcttgcaga 1449707  T
Q  224 gaccatttagtggtct 239  Q
    ||||||||||||||||    
T  1449706 gaccatttagtggtct 1449691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 25 - 205
Target Start/End: Complemental strand, 21823526 - 21823347
Alignment:
Q  25 catgttgataactatagatgattctaaaaatggcttgtggttcataaaatattagaggttggtcggttgcatttcatggtcttatttttggatattttgt 124  Q
    |||||||||||||||| ||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21823526 catgttgataactatatatg-ttctaaaaatgatttgtggttcataaaatattagaggttggtcggttgcatttcatggtcttatttttggatattttgt 21823428  T
Q  125 tgataacattgagtcgcatggcatatcatggagtatttgggctacggccttgcagagaccatttagggatctagttttatt 205  Q
    |||| ||| ||||||||||  ||||||||| ||| ||||||||||| |||||||||||||||| || | ||||||||||||    
T  21823427 tgatgacaatgagtcgcataacatatcatgaagtctttgggctacgcccttgcagagaccattcagtggtctagttttatt 21823347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 24 - 170
Target Start/End: Original strand, 24881473 - 24881618
Alignment:
Q  24 gcatgttgataactatagatgattctaaaaatggcttgtggttcataaaatattagaggttggtcggttgcatttcatggtcttatttttggatattttg 123  Q
    ||||||||||||||||| |||||||||||||||| |||||||||| |||||||||| ||||| |  ||||||||||||| | |||||||||   ||||||    
T  24881473 gcatgttgataactatatatgattctaaaaatggtttgtggttcacaaaatattagtggttgatgtgttgcatttcatgattttatttttg---attttg 24881569  T
Q  124 ttgataac--attgagtcgcatggcatatcatggagtatttgggctacg 170  Q
    ||||| ||  |||||||||||| |||||||||||||| |||||||||||    
T  24881570 ttgattacatattgagtcgcatagcatatcatggagtctttgggctacg 24881618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 239
Target Start/End: Complemental strand, 1449726 - 1449648
Alignment:
Q  161 ttgggctacggccttgcagagaccatttagggatctagttttatttgggctacgg-cttgctgagaccatttagtggtct 239  Q
    ||||||||||| |||||||||||||||||| | |||||||||| ||||||||||| ||||| ||||||||||||||||||    
T  1449726 ttgggctacggtcttgcagagaccatttagtggtctagtttta-ttgggctacggccttgcagagaccatttagtggtct 1449648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 24881686 - 24881768
Alignment:
Q  158 tatttgggctacggccttgcagagaccatttagggatctagttttatttgggctacgg-cttgctgagaccatttagtggtct 239  Q
    |||||| |||||||||||||| ||||||||||| | | |||||||||||||| ||||| ||||| ||||||||||| ||||||    
T  24881686 tatttgagctacggccttgcaaagaccatttagtggtatagttttatttgggatacggtcttgcagagaccatttaatggtct 24881768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 24881730 - 24881811
Alignment:
Q  158 tatttgggctacggccttgcagagaccatttagggatctagttttatttgggctacggc-ttgctgagaccatttagtggtct 239  Q
    |||||||| ||||| |||||||||||||||||  | |||||||||| |||||||||| | |||| ||||||||||||||||||    
T  24881730 tatttgggatacggtcttgcagagaccatttaatggtctagtttta-ttgggctacgacattgcagagaccatttagtggtct 24881811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 239
Target Start/End: Complemental strand, 1449683 - 1449606
Alignment:
Q  161 ttgggctacggccttgcagagaccatttagggatctagttttatttgggctacgg-cttgctgagaccatttagtggtct 239  Q
    |||||||||||||||||||||||||||||| | |||||| |  || || |||||| ||||| ||||||||||||||||||    
T  1449683 ttgggctacggccttgcagagaccatttagtggtctagtct--ttgggactacggccttgcagagaccatttagtggtct 1449606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 237
Target Start/End: Original strand, 24881642 - 24881722
Alignment:
Q  158 tatttgggctacggccttgcagagaccatttagggatctagttttatttgggctacgg-cttgctgagaccatttagtggt 237  Q
    |||||| ||||||||||||||||||  |||||| | ||| |||||||||| ||||||| |||||  |||||||||||||||    
T  24881642 tatttgagctacggccttgcagagaaaatttagtggtctggttttatttgagctacggccttgcaaagaccatttagtggt 24881722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 205
Target Start/End: Complemental strand, 1449636 - 1449597
Alignment:
Q  166 ctacggccttgcagagaccatttagggatctagttttatt 205  Q
    ||||||||||||||||||||||||| | ||||||||||||    
T  1449636 ctacggccttgcagagaccatttagtggtctagttttatt 1449597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 14609126 - 14609188
Alignment:
Q  23 ggcatgttgataactatagatgattctaaaaatggcttgtggttcataaaatattagaggttg 85  Q
    ||||| || ||||||||| || ||| |||| |||| |||||||| ||||||||||||||||||    
T  14609126 ggcatattcataactatatataattttaaatatggtttgtggtttataaaatattagaggttg 14609188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 124; Significance: 6e-64; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 25 - 239
Target Start/End: Complemental strand, 8542343 - 8542129
Alignment:
Q  25 catgttgataactatagatgattctaaaaatggcttgtggttcataaaatattagaggttggtcggttgcatttcatggtcttatttttggatattttgt 124  Q
    |||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  8542343 catgttgataactatatatgattctaaaaatgatttgtggttcataaaatattagaggttggttggttgcatttcatggttttatttttggatattttgt 8542244  T
Q  125 tgataacattgagtcgcatggcatatcatggagtatttgggctacggccttgcagagaccatttagggatctagttttatttgggctacgg-cttgctga 223  Q
    || | ||| ||||||||||  ||| ||||| ||| |||||||||||| ||||||||||||||| |  | |||||||||| ||||||||||| ||||| ||    
T  8542243 tggtgacaatgagtcgcataacatttcatgaagtctttgggctacggtcttgcagagaccattcaatggtctagtttta-ttgggctacggccttgcaga 8542145  T
Q  224 gaccatttagtggtct 239  Q
    ||||||||||||||||    
T  8542144 gaccatttagtggtct 8542129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 25 - 239
Target Start/End: Complemental strand, 8607582 - 8607368
Alignment:
Q  25 catgttgataactatagatgattctaaaaatggcttgtggttcataaaatattagaggttggtcggttgcatttcatggtcttatttttggatattttgt 124  Q
    |||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  8607582 catgttgataactatatatgattctaaaaatgatttgtggttcataaaatattagaggttggttggttgcatttcatggttttatttttggatattttgt 8607483  T
Q  125 tgataacattgagtcgcatggcatatcatggagtatttgggctacggccttgcagagaccatttagggatctagttttatttgggctacgg-cttgctga 223  Q
    || | ||| ||||||||||  ||| ||||| ||| |||||||||||| ||||||||||||||| |  | |||||||||| ||||||||||| ||||| ||    
T  8607482 tggtgacaatgagtcgcataacatttcatgaagtctttgggctacggtcttgcagagaccattcaatggtctagtttta-ttgggctacggccttgcaga 8607384  T
Q  224 gaccatttagtggtct 239  Q
    ||||||||||||||||    
T  8607383 gaccatttagtggtct 8607368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 36301897 - 36301832
Alignment:
Q  17 agattcggcatgttgataactatagatgattctaa-aaatggcttgtggttcataaaatattagag 81  Q
    ||||| ||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||    
T  36301897 agatttggcatgttgatgactatatatgattctaagaaatggcttgtggttcataaaatattagag 36301832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 8542164 - 8542120
Alignment:
Q  161 ttgggctacggccttgcagagaccatttagggatctagttttatt 205  Q
    |||||||||||||||||||||||||||||| | ||||||||||||    
T  8542164 ttgggctacggccttgcagagaccatttagtggtctagttttatt 8542120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 8607403 - 8607359
Alignment:
Q  161 ttgggctacggccttgcagagaccatttagggatctagttttatt 205  Q
    |||||||||||||||||||||||||||||| | ||||||||||||    
T  8607403 ttgggctacggccttgcagagaccatttagtggtctagttttatt 8607359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 20956502 - 20956542
Alignment:
Q  161 ttgggctacggccttgcagagaccatttagggatctagttt 201  Q
    ||||||| |||||||||||||| ||||||| ||||||||||    
T  20956502 ttgggcttcggccttgcagagatcatttagtgatctagttt 20956542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 22836786 - 22836826
Alignment:
Q  161 ttgggctacggccttgcagagaccatttagggatctagttt 201  Q
    ||||||| |||||||||||||| ||||||| ||||||||||    
T  22836786 ttgggcttcggccttgcagagatcatttagtgatctagttt 22836826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 27673480 - 27673440
Alignment:
Q  161 ttgggctacggccttgcagagaccatttagggatctagttt 201  Q
    ||||||| |||||||||||||| ||||||| ||||||||||    
T  27673480 ttgggcttcggccttgcagagatcatttagtgatctagttt 27673440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 547463 - 547244
Alignment:
Q  17 agattcggcatgttgataactatagatgattctaaaaatggcttgtggttcataaaatattagaggttggtcggttgcatttcatggtcttatttttgga 116  Q
    ||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||     
T  547463 agatttggcatgttgataactatatataattctaaaaatggcttgtggttcataaaatattagaggttggtgggttgcatttcaaggttttatttttgg- 547365  T
Q  117 tattttgttgataacattgagtcgcatggcatatcatggagtatttgggctacggccttgcagagaccatttagggatctagttttatttgggctacgg- 215  Q
      ||||| |||| ||| | ||||||||  ||||||||| ||||||| ||||| ||||||||||||||||||||| | |||||||||| |||| ||||||     
T  547364 --ttttggtgatgacactcagtcgcatatcatatcatgaagtattttggctaaggccttgcagagaccatttagtggtctagtttta-ttggactacggc 547268  T
Q  216 cttgctgagaccatttagtggtct 239  Q
    ||||  ||||||||||||||||||    
T  547267 cttgtagagaccatttagtggtct 547244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 11883798 - 11883838
Alignment:
Q  161 ttgggctacggccttgcagagaccatttagggatctagttt 201  Q
    ||||||| |||||||||||||| ||||||| ||||||||||    
T  11883798 ttgggcttcggccttgcagagatcatttagtgatctagttt 11883838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 17523939 - 17523979
Alignment:
Q  162 tgggctacggccttgcagagaccatttagggatctagtttt 202  Q
    ||||||||||||| ||||||| ||||||| |||||||||||    
T  17523939 tgggctacggcctagcagagatcatttagtgatctagtttt 17523979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 103; Significance: 2e-51; HSPs: 3)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 24 - 239
Target Start/End: Original strand, 10124 - 10336
Alignment:
Q  24 gcatgttgataactatagatgattctaaaaatggcttgtggttcataaaatattagaggttggtcggttgcatttcatggtcttatttttggatattttg 123  Q
    ||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||   |||| ||    
T  10124 gcatgttgataactatatatgattttaaaaatggtttgtggttcataaaatattagaggtcggtgggttgcatttcatggttttattttt---tattatg 10220  T
Q  124 ttgataacattgagtcgcatggcatatcatggagtatttgggctacggccttgcagagaccatttagggatctagttttatttgggcta-cggcttgctg 222  Q
    ||||| ||||||||| |||| |||||||||||||| ||||||||| || ||||||||||||||||||   ||||| ||| ||||||||| |  ||||| |    
T  10221 ttgatgacattgagttgcatagcatatcatggagtctttgggctatggtcttgcagagaccatttagttgtctag-tttctttgggctaccaccttgcag 10319  T
Q  223 agaccatttagtggtct 239  Q
    |||||||||| ||||||    
T  10320 agaccatttaatggtct 10336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 10386 - 10431
Alignment:
Q  160 tttgggctacggccttgcagagaccatttagggatctagttttatt 205  Q
    |||||||||||||||||||||||| |||||| | ||||||||||||    
T  10386 tttgggctacggccttgcagagactatttagtggtctagttttatt 10431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 239
Target Start/End: Original strand, 10343 - 10422
Alignment:
Q  160 tttgggctacggccttgcagagaccatttagggatctagttttatttgggctacggc-ttgctgagaccatttagtggtct 239  Q
    |||||||||| |||||||| | ||||||| | | ||||||||  ||||||||||||| |||| ||||| ||||||||||||    
T  10343 tttgggctaccgccttgcacaaaccattttgtggtctagtttc-tttgggctacggccttgcagagactatttagtggtct 10422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 168
Target Start/End: Original strand, 194874 - 195028
Alignment:
Q  11 atcatcagattcggcatgttgataactatagatgattctaaaaatggcttgtggttcataaaatattagaggttggtcggttgcatttcatggtcttatt 110  Q
    ||||| ||||| |||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||| | |||||    
T  194874 atcattagatttggcacgttgataactatatatgattctaaaaatagcttgtggttcataaaatattagagcttggtgggttgcatttcatgattttatt 194973  T
Q  111 tttggatattttgttgataacattgagtcgcatggcatatcatggagtatttgggcta 168  Q
    |||||   |||||||||| ||||||||| || |  |||| |||| |||||||||||||    
T  194974 tttgg---ttttgttgatgacattgagttgcgtaacatagcatgaagtatttgggcta 195028  T

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Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 27 - 205
Target Start/End: Complemental strand, 16289247 - 16289072
Alignment:
Q  27 tgttgataactatagatgattctaaaaatggcttgtggttcataaaatattagaggttggtcggttgcatttcatggtcttatttttggatattttgttg 126  Q
    |||||||||||||| |||||| | |||||||| ||||||||| |||||||||||||| ||| |||||||||||||||| ||||||||||   ||||||||    
T  16289247 tgttgataactatatatgattatgaaaatggcatgtggttcacaaaatattagaggtcggtgggttgcatttcatggttttatttttgg---ttttgttg 16289151  T
Q  127 ataacattgagtcgcatggcatatcatggagtatttgggctacggccttgcagagaccatttagggatctagttttatt 205  Q
    || ||||||||| | ||   |||||||| |||||||| |||| | | ||| ||||||||||||| | ||||||||||||    
T  16289150 atgacattgagtagtataatatatcatgaagtatttgagctatgacattgaagagaccatttagtggtctagttttatt 16289072  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 43282918 - 43282958
Alignment:
Q  161 ttgggctacggccttgcagagaccatttagggatctagttt 201  Q
    ||||||| |||||||||||||| ||||||| ||||||||||    
T  43282918 ttgggcttcggccttgcagagatcatttagtgatctagttt 43282958  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 52267001 - 52267041
Alignment:
Q  161 ttgggctacggccttgcagagaccatttagggatctagttt 201  Q
    ||||||| |||||||||||||| ||||||| ||||||||||    
T  52267001 ttgggctccggccttgcagagatcatttagtgatctagttt 52267041  T

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Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 161 - 239
Target Start/End: Complemental strand, 3929299 - 3929220
Alignment:
Q  161 ttgggctacggccttgcagagaccatttagggatctagttttatttgggctacggc-ttgctgagaccatttagtggtct 239  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||| ||||||||||| ||||||    
T  3929299 ttgggctacggccttgcagagaccatttagtggtctagttttatttgggctacggctttgcagagaccatttaatggtct 3929220  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 3929212 - 3929169
Alignment:
Q  162 tgggctacggccttgcagagaccatttagggatctagttttatt 205  Q
    ||||||||||||||||||||||||||||| | ||||||||||||    
T  3929212 tgggctacggccttgcagagaccatttagtggtctagttttatt 3929169  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 3929258 - 3929178
Alignment:
Q  158 tatttgggctacggccttgcagagaccatttagggatctagttttatttgggctacgg-cttgctgagaccatttagtggtct 239  Q
    ||||||||||||||| ||||||||||||||||  | |||||| |  | |||||||||| ||||| ||||||||||||||||||    
T  3929258 tatttgggctacggctttgcagagaccatttaatggtctagtct--tctgggctacggccttgcagagaccatttagtggtct 3929178  T

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Target: scaffold0150 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 20329 - 20289
Alignment:
Q  161 ttgggctacggccttgcagagaccatttagggatctagttt 201  Q
    ||||||| |||||||||||||| ||||||| ||||||||||    
T  20329 ttgggcttcggccttgcagagatcatttagtgatctagttt 20289  T

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Target: scaffold0150; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 27158 - 27118
Alignment:
Q  161 ttgggctacggccttgcagagaccatttagggatctagttt 201  Q
    ||||||| |||||||||||||| ||||||| ||||||||||    
T  27158 ttgggcttcggccttgcagagatcatttagtgatctagttt 27118  T

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Target: scaffold0090 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 6179 - 6219
Alignment:
Q  161 ttgggctacggccttgcagagaccatttagggatctagttt 201  Q
    ||||||| |||||||||||||| ||||||| ||||||||||    
T  6179 ttgggcttcggccttgcagagatcatttagtgatctagttt 6219  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 5452348 - 5452388
Alignment:
Q  161 ttgggctacggccttgcagagaccatttagggatctagttt 201  Q
    ||||||| |||||||||||||| ||||||| ||||||||||    
T  5452348 ttgggcttcggccttgcagagatcatttagtgatctagttt 5452388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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