View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3875_high_13 (Length: 238)
Name: NF3875_high_13
Description: NF3875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3875_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 29662475 - 29662253
Alignment:
| Q |
1 |
cattcatctattgagaaatactcataaatattcaagacaagataatacacttgtggatacctcgtgccataatttgctcctcaattaccatatcatcata |
100 |
Q |
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| T |
29662475 |
cattcctctattgagaaatactcataaatattcaagacaagataatacacttgtggatacctcgtgccataatttgctcctcaattcccatatcatcata |
29662376 |
T |
|
| Q |
101 |
caaactcaatccaactcctcacatttactacacaaaaatagccacaaaacaaatatatatatcatcaataacactaggcaaagagaatttatattatatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29662375 |
caaactcaatccaactcctcacatttactacacaaaaatagccacaaaacaaatatatatatcatcaataacactaggcaaagagaatttatattatatt |
29662276 |
T |
|
| Q |
201 |
ttag-tttctagttgatataatt |
222 |
Q |
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|||| |||||||||||||||||| |
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| T |
29662275 |
ttagttttctagttgatataatt |
29662253 |
T |
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