View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3875_low_2 (Length: 640)

Name: NF3875_low_2
Description: NF3875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3875_low_2
NF3875_low_2
[»] chr1 (13 HSPs)
chr1 (11-298)||(33426346-33426633)
chr1 (369-607)||(33426037-33426275)
chr1 (59-298)||(34304486-34304725)
chr1 (369-588)||(34304796-34305015)
chr1 (108-298)||(34322710-34322900)
chr1 (58-298)||(34314509-34314752)
chr1 (370-622)||(34314194-34314437)
chr1 (111-298)||(34312071-34312258)
chr1 (468-620)||(34317390-34317542)
chr1 (369-532)||(34311837-34312000)
chr1 (151-266)||(34317097-34317212)
chr1 (377-441)||(34317323-34317387)
chr1 (369-469)||(34322971-34323071)
[»] chr5 (2 HSPs)
chr5 (369-622)||(25651433-25651677)
chr5 (177-298)||(25651240-25651361)


Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 298
Target Start/End: Complemental strand, 33426633 - 33426346
Alignment:
Q  11 cacagaccttaggtgatatccctttattcaaaacaaacacatgctaattatttaaaagctcattgttattagccccatcattgctaagattgcttgcttt 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||| |||||| |||||||||||    
T  33426633 cacagaccttaggtgatatccctttattcaaaacaaacacatgctaattatttccaagctcattgttattagcctcatcatcgctaagcttgcttgcttt 33426534  T
Q  111 ctcattctcctcctcaatgctaacaagtctagtacttttaatcttaccatatgacaacttacgaagtgttaaagtaagaacaccattttccatcttggcc 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33426533 ctcattctcctcctcaatgctaacaagtctagtacttttaatcttaccatgtgacaacttacgaagtgttaaagtaagaacaccattttccatcttggcc 33426434  T
Q  211 ttaaccgaatccaaatcagcattttcaggcaatctaaactgtctccaaaattttccatatgatctttcagctctatgccaacgatcac 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33426433 ttaaccgaatccaaatcagcattttcaggcaatctaaactgtctccaaaattttccatatgatctttcagctctatgccaacgatcac 33426346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 369 - 607
Target Start/End: Complemental strand, 33426275 - 33426037
Alignment:
Q  369 tatcttatcttttctcaaccccggcacgtccatcactataacatgttcttctggagtttccttccagtctactttaaccggtgacaatgtcatggctggt 468  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  33426275 tatcttatcttttctcaaccccggcacgtccatcactataacatgttcttctggagtttccttccagtctactttaaccggtgacaatgtcatggctgat 33426176  T
Q  469 tggtctttctcaactccaaaggaggtttgttccatgacacaaaatgggtctgggaaatgatcagctaagagagggtttggggaatccatggatggcattg 568  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33426175 tggtctttctcaactccaaagtaggtttgttccatgacacaaaatgggtctgggaaatgatcagctaagagagggtttggggaatccatggatggcattg 33426076  T
Q  569 ctaatcctttggctttggtaggaaaactacaagcaagaa 607  Q
    |||||||||||||||||||||||||||||||||||||||    
T  33426075 ctaatcctttggctttggtaggaaaactacaagcaagaa 33426037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 59 - 298
Target Start/End: Original strand, 34304486 - 34304725
Alignment:
Q  59 tatttaaaagctcattgttattagccccatcattgctaagattgcttgctttctcattctcctcctcaatgctaacaagtctagtacttttaatcttacc 158  Q
    ||||| ||||||||||||||||||||||||||||| | |  |||  || ||||||||||||||| ||||||||||||| ||||||||||||||||| | |    
T  34304486 tatttcaaagctcattgttattagccccatcattgttgaccttgggtgatttctcattctcctcatcaatgctaacaactctagtacttttaatctgatc 34304585  T
Q  159 atatgacaacttacgaagtgttaaagtaagaacaccattttccatcttggccttaaccgaatccaaatcagcattttcaggcaatctaaactgtctccaa 258  Q
    ||  |||||||||  |||||| |||||||||||||||||||| ||||| ||||| || |||||||||||||||||||||||||||||||| || ||||||    
T  34304586 atgagacaacttattaagtgtcaaagtaagaacaccattttctatcttagccttcacagaatccaaatcagcattttcaggcaatctaaattgcctccaa 34304685  T
Q  259 aattttccatatgatctttcagctctatgccaacgatcac 298  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34304686 aattttccatatgatctttcagctctatgccaacgatcac 34304725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 369 - 588
Target Start/End: Original strand, 34304796 - 34305015
Alignment:
Q  369 tatcttatcttttctcaaccccggcacgtccatcactataacatgttcttctggagtttccttccagtctactttaaccggtgacaatgtcatggctggt 468  Q
    ||||| ||||||||||||||| ||||||||||||  ||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  34304796 tatctcatcttttctcaaccctggcacgtccatcgttatgacatgtccttctggagtttccttccagtctactttaaccggtgacagtgtcattgctggt 34304895  T
Q  469 tggtctttctcaactccaaaggaggtttgttccatgacacaaaatgggtctgggaaatgatcagctaagagagggtttggggaatccatggatggcattg 568  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||| | |||||||||| | ||||||||||||||||| ||||    
T  34304896 tggtctttctcaactccaaaggaggtttgtttcatgacgcaaaatggatctgggaaatgatcggataagagagggatgggggaatccatggatggtattg 34304995  T
Q  569 ctaatcctttggctttggta 588  Q
     | | ||||||| |||||||    
T  34304996 gtgaacctttggttttggta 34305015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 108 - 298
Target Start/End: Original strand, 34322710 - 34322900
Alignment:
Q  108 tttctcattctcctcctcaatgctaacaagtctagtacttttaatcttaccatatgacaacttacgaagtgttaaagtaagaacaccattttccatcttg 207  Q
    |||||||| ||||||  |||||||||| | ||||| || ||| |||||| ||| ||||||||||  |||||| |||||||| |||||||||||||||||     
T  34322710 tttctcatcctcctcagcaatgctaaccattctaggacctttgatcttatcatgtgacaacttattaagtgtcaaagtaagtacaccattttccatctta 34322809  T
Q  208 gccttaaccgaatccaaatcagcattttcaggcaatctaaactgtctccaaaattttccatatgatctttcagctctatgccaacgatcac 298  Q
    ||||| || |||||||||||| ||||||||||||||||||| || ||||| ||||| ||||| ||||||||| ||||||||||| ||||||    
T  34322810 gccttcactgaatccaaatcaacattttcaggcaatctaaattgcctccagaatttcccataagatctttcaactctatgccaatgatcac 34322900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 58 - 298
Target Start/End: Complemental strand, 34314752 - 34314509
Alignment:
Q  58 ttatttaaaagctcattgttattagccccatcattgctaagattgcttgctttctcattctcctcctcaatgctaacaagtctagtacttttaatcttac 157  Q
    |||||| |||| ||| || ||||||||||||||||  |||| |||| || ||||||||||||||  ||||||||||||| |||| |||||||||||| |     
T  34314752 ttatttcaaagttcagtggtattagccccatcattattaagcttgcctgatttctcattctccttatcaatgctaacaactctaatacttttaatctgat 34314653  T
Q  158 ---catatgacaacttacgaagtgttaaagtaagaacaccattttccatcttggccttaaccgaatccaaatcagcattttcaggcaatctaaactgtct 254  Q
       |||  |||| ||||  |||||| ||| |||||||||||||||||| ||| ||||| || ||||| ||||||||||| || |||||||||| ||||||    
T  34314652 attcatgggacagcttattaagtgtcaaaataagaacaccattttccaccttagccttcacggaatcaaaatcagcattctccggcaatctaagctgtct 34314553  T
Q  255 ccaaaattttccatatgatctttcagctctatgccaacgatcac 298  Q
    ||| |||||||||||    |||||||||||||||||||||||||    
T  34314552 ccagaattttccatacatcctttcagctctatgccaacgatcac 34314509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 370 - 622
Target Start/End: Complemental strand, 34314437 - 34314194
Alignment:
Q  370 atcttatcttttctcaaccccggcacgtccatcactataacatgttcttctggagtttccttccagtctactttaaccggtgacaatgtcatggctggtt 469  Q
    |||| ||||||||| || || ||||| || |||| |||||||||||| |||| |||||||||||| |||||| ||          |||||||||||| ||    
T  34314437 atctcatcttttctaaatcctggcacatcaatcattataacatgttcatctgaagtttccttccaatctactatag---------atgtcatggctgatt 34314347  T
Q  470 ggtctttctcaactccaaaggaggtttgttccatgacacaaaatgggtctgggaaatgatcagctaagagagggtttggggaatccatggatggcattgc 569  Q
    ||||| ||||||||||| ||| | |||||||| |||| |||||| |||||||||||||||||||||||||||| || || ||||||||||| ||   |      
T  34314346 ggtctatctcaactccataggggatttgttccgtgacgcaaaatcggtctgggaaatgatcagctaagagaggattgggagaatccatggaaggtggtag 34314247  T
Q  570 taatcctttggctttggtaggaaaactacaagcaagaacaaacaagaaaaatg 622  Q
     || ||||| |||||||||||||||| || || |||||||| |||||||||||    
T  34314246 caaaccttttgctttggtaggaaaaccaccagtaagaacaagcaagaaaaatg 34314194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 111 - 298
Target Start/End: Complemental strand, 34312258 - 34312071
Alignment:
Q  111 ctcattctcctcctcaatgctaacaagtctagtacttttaatcttaccatatgacaacttacgaagtgttaaagtaagaacaccattttccatcttggcc 210  Q
    |||| |||||||  |||||||||| | ||||| || |||| ||||| | | ||||||||||  |||||| |||||||| |||||||||||||| || |||    
T  34312258 ctcactctcctcagcaatgctaaccattctaggacctttagtcttatcttgtgacaacttattaagtgtcaaagtaagtacaccattttccattttagcc 34312159  T
Q  211 ttaaccgaatccaaatcagcattttcaggcaatctaaactgtctccaaaattttccatatgatctttcagctctatgccaacgatcac 298  Q
    ||||| || ||||||||| ||||||| ||||||||||| || ||||| ||||||||||| ||||||||| |||| |||||| ||||||    
T  34312158 ttaactgagtccaaatcaacattttctggcaatctaaattgcctccagaattttccataagatctttcaactctgtgccaatgatcac 34312071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 468 - 620
Target Start/End: Original strand, 34317390 - 34317542
Alignment:
Q  468 ttggtctttctcaactccaaaggaggtttgttccatgacacaaaatgggtctgggaaatgatcagctaagagagggtttggggaatccatggatggcatt 567  Q
    ||||||||||||||||||||||| | ||| ||||||||| ||| || |||||||||||||||||||||||||||| || || ||||||||||| ||        
T  34317390 ttggtctttctcaactccaaaggggatttcttccatgacgcaatattggtctgggaaatgatcagctaagagaggattgggagaatccatggaaggtggc 34317489  T
Q  568 gctaatcctttggctttggtaggaaaactacaagcaagaacaaacaagaaaaa 620  Q
     ||   ||||| |||||||| |||||||||| ||||||||||| |||||||||    
T  34317490 actggaccttttgctttggttggaaaactaccagcaagaacaatcaagaaaaa 34317542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 369 - 532
Target Start/End: Complemental strand, 34312000 - 34311837
Alignment:
Q  369 tatcttatcttttctcaaccccggcacgtccatcactataacatgttcttctggagtttccttccagtctactttaaccggtgacaatgtcatggctggt 468  Q
    ||||| ||||||||| | ||| |||||||| | || |||||||||| | |||||||||||||||||||||||| || | ||||||| || ||||| ||||    
T  34312000 tatctcatcttttcttatccctggcacgtcgaacattataacatgtccctctggagtttccttccagtctactctagctggtgacagtgacatggatggt 34311901  T
Q  469 tggtctttctcaactccaaaggaggtttgttccatgacacaaaatgggtctgggaaatgatcag 532  Q
    | || ||| ||||||||||||| | ||||||| | ||||| |||||| || |||||| ||||||    
T  34311900 tcgtttttttcaactccaaaggggatttgttctaagacacgaaatggatcggggaaacgatcag 34311837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 151 - 266
Target Start/End: Original strand, 34317097 - 34317212
Alignment:
Q  151 atcttaccatatgacaacttacgaagtgttaaagtaagaacaccattttccatcttggccttaaccgaatccaaatcagcattttcaggcaatctaaact 250  Q
    ||||||||||  |||||||||  || ||| ||||||||||| ||||||||| | || |||||||  ||||||||||||||||| || |||||||| ||||    
T  34317097 atcttaccatgcgacaacttattaaatgtcaaagtaagaactccattttccttattagccttaattgaatccaaatcagcattctctggcaatcttaact 34317196  T
Q  251 gtctccaaaattttcc 266  Q
    ||||||| ||||||||    
T  34317197 gtctccagaattttcc 34317212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 377 - 441
Target Start/End: Original strand, 34317323 - 34317387
Alignment:
Q  377 cttttctcaaccccggcacgtccatcactataacatgttcttctggagtttccttccagtctact 441  Q
    ||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||| ||||||    
T  34317323 cttttctcaaccccggcacgtccatcattataacatgttcatctgaagtttccttccaatctact 34317387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 369 - 469
Target Start/End: Original strand, 34322971 - 34323071
Alignment:
Q  369 tatcttatcttttctcaaccccggcacgtccatcactataacatgttcttctggagtttccttccagtctactttaaccggtgacaatgtcatggctggt 468  Q
    ||||| ||||||||| | ||| || || |||| || |||||||||| | |||||||||||||||||||||||| || | ||||||| |||||||| ||||    
T  34322971 tatctcatcttttcttatccctggaacatccaacattataacatgtccatctggagtttccttccagtctactctagctggtgacattgtcatggatggt 34323070  T
Q  469 t 469  Q
    |    
T  34323071 t 34323071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 369 - 622
Target Start/End: Original strand, 25651433 - 25651677
Alignment:
Q  369 tatcttatcttttctcaaccccggcacgtccatcactataacatgttcttctggagtttccttccagtctactttaaccggtgacaatgtcatggctggt 468  Q
    ||||| |||||||||||||| |  |||| |||||| |||||||||||| |||| |||||||||||| |||||| || |         ||||||||||| |    
T  25651433 tatctcatcttttctcaacctcaccacgcccatcattataacatgttcatctgaagtttccttccaatctactatatc---------tgtcatggctgat 25651523  T
Q  469 tggtctttctcaactccaaaggaggtttgttccatgacacaaaatgggtctgggaaatgatcagctaagagagggtttggggaatccatggatggcattg 568  Q
    ||||||||||||| |||||||| ||||||||||  ||| |||||||||| |||||||||||||||||||||||| || || ||||||||||| || | |     
T  25651524 tggtctttctcaattccaaagggggtttgttccgcgacccaaaatgggtttgggaaatgatcagctaagagaggattgggagaatccatggaaggtaata 25651623  T
Q  569 ctaatcctttggctttggtaggaaaactacaagcaagaacaaacaagaaaaatg 622  Q
     | | ||||||| | ||||||||||||||| |||||||||| ||||||||||||    
T  25651624 gtgaacctttggttctggtaggaaaactaccagcaagaacacacaagaaaaatg 25651677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 177 - 298
Target Start/End: Original strand, 25651240 - 25651361
Alignment:
Q  177 tgttaaagtaagaacaccattttccatcttggccttaaccgaatccaaatcagcattttcaggcaatctaaactgtctccaaaattttccatatgatctt 276  Q
    |||||||||||||||||||| ||||||||| | ||||| ||||||||||||| ||||||| || |||||||  |||||||| ||||||||| |    |||    
T  25651240 tgttaaagtaagaacaccatcttccatctttgtcttaatcgaatccaaatcaacattttctggtaatctaagttgtctccagaattttccacacatcctt 25651339  T
Q  277 tcagctctatgccaacgatcac 298  Q
    ||| ||||||||||||||||||    
T  25651340 tcaactctatgccaacgatcac 25651361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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