View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3875_low_3 (Length: 482)
Name: NF3875_low_3
Description: NF3875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3875_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 340
Target Start/End: Complemental strand, 35229887 - 35229564
Alignment:
| Q |
18 |
cttggtgctgctattatcttcaacaaggaccttggttgggatgatcacgtaagttgaaaaattgtttt-gtaaaattatatatttgtttttctgaatttt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35229887 |
cttggtgctgctattatcttcaacaaggaccttggttgggatgatcacgtaagttgaaaaattgtttttgtaaaattatatatttgtttttctgaatttt |
35229788 |
T |
|
| Q |
117 |
ctatctcatttatcttgcgtgttcattaattattattattcttgcagtggatcttctgggtgggaccatttattggagcagctcttgcagcactctacca |
216 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35229787 |
ctatctcatttgtcttgtgtgttcattaattattattattcttgcagtggatcttctgggtgggaccatttattggagcagctcttgcagcactctacca |
35229688 |
T |
|
| Q |
217 |
cgtggttgtaatcagagccattcccttcaagtctaagtaatcgaatcaaacggttcgtgatcaatcaagacatgtttgtgggcttcatttcatcatcatc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35229687 |
cgtggttgtaatcagagccattcccttcaagtctaagtaatcgaatcaaacggttcgtgatcaatcaagacatgtttgtgggcttcatttcatcatcatc |
35229588 |
T |
|
| Q |
317 |
cttttctttttccttgttttcttc |
340 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
35229587 |
cttttctttttccttgttttcttc |
35229564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 428 - 468
Target Start/End: Complemental strand, 35229481 - 35229441
Alignment:
| Q |
428 |
tgagtaatggcctaattttcctatggttttgagttggaaat |
468 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35229481 |
tgagtaatggcctaattttcctatggttttgagttggaaat |
35229441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 159 - 249
Target Start/End: Complemental strand, 31459392 - 31459302
Alignment:
| Q |
159 |
tgcagtggatcttctgggtgggaccatttattggagcagctcttgcagcactctaccacgtggttgtaatcagagccattcccttcaagtc |
249 |
Q |
| |
|
|||||||||| |||||||| |||||||| ||||| ||||| |||||||| || |||||| ||||| |||||||||||||| |||||||| |
|
|
| T |
31459392 |
tgcagtggattttctgggttggaccattcattggtgcagcacttgcagctctttaccacacagttgtgatcagagccattcctttcaagtc |
31459302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 31459547 - 31459497
Alignment:
| Q |
18 |
cttggtgctgctattatcttcaacaaggaccttggttgggatgatcacgta |
68 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
31459547 |
cttggtgctgcaattatcttcaacaaagaccttggttgggatgatcacgta |
31459497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 204
Target Start/End: Original strand, 41038053 - 41038099
Alignment:
| Q |
158 |
ttgcagtggatcttctgggtgggaccatttattggagcagctcttgc |
204 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| |||||||| |
|
|
| T |
41038053 |
ttgcagtggatattctgggttggaccatttattggagctgctcttgc |
41038099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University