View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3875_low_4 (Length: 454)
Name: NF3875_low_4
Description: NF3875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3875_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 18 - 451
Target Start/End: Original strand, 233557 - 233990
Alignment:
| Q |
18 |
agattcatggttggttgactgctgtaatattcagatttgattctatagtttgaagcttaattaatggtggaagaggcttgtttaagtgacctgtgtcgac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
233557 |
agattcatggttggttgactgctgtaatattcagatttgattctatagtttgaagcttaattaatggtggaagaggcttgtttaagtgacctgtgtcgac |
233656 |
T |
|
| Q |
118 |
cactaaaccgaaggctgtgtgactcagtccaattacattaatttataaatgattccttaattctaagctgcgnnnnnnnngcatgattagtgaatctgag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
233657 |
cactaaaccgaaggctgtgtgactcagtccaattacattaatttataaatgattccttaattctaagctgcgaaaaaaaagcatgattagtgaatctgag |
233756 |
T |
|
| Q |
218 |
ttaatcagcttttgtgtctaaatggtggtcatgaatcatgcatgaaatgatgctaatgaactaactttggtctctcattagacggtggaaaagagtaaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
233757 |
ttaatcagcttttgtgtctaaatggtggtcatgaatcatgcatgaaatgatgctaatgaactaactttggtctctcattagacggtggaaaagagtaaaa |
233856 |
T |
|
| Q |
318 |
tagaaagcactaaatgaaccgtgtatatttctctagtaacactttgggctgtttcattcttccggcaccttttaattagtaaaattatataggacccatt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
233857 |
tagaaagcactaaatgaaccgtgtatatttctctagtaacactttgggctgtttcattcttccggcaccttttaattagtaaaattatataggacccatt |
233956 |
T |
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| Q |
418 |
tccttttatttaatacatccacctatgctactcc |
451 |
Q |
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||||||||||||||||||||||| ||||| |||| |
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| T |
233957 |
tccttttatttaatacatccacccatgctgctcc |
233990 |
T |
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