View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3875_low_7 (Length: 358)
Name: NF3875_low_7
Description: NF3875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3875_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 21 - 354
Target Start/End: Complemental strand, 29946814 - 29946481
Alignment:
| Q |
21 |
cacagagcaggtaattgaattgatgtaatgttgttgttgagtgtgagcaaacgtttgaagtgtgtgtaatggtttcggttttgttgtacaggttttggag |
120 |
Q |
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| T |
29946814 |
cacacagcaggtaattgaattgatgaaatgttgttgttgagtgtgagcaaacgtttgaagtgtgtgtaatggttttggttttgttgtacaggttttagag |
29946715 |
T |
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| Q |
121 |
cagttgccgagagtaatatcgtcgctggatgcacacatggaaaatgggttgcaaaagttagaatcttttcttctctaattgataagtcattatgactgtg |
220 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29946714 |
cagttgccgagagtaatatcgtctctggatgcacacatggaaaatgggttgcaaaagttagaatcttttcttctctaattgataagtcattatgactgtg |
29946615 |
T |
|
| Q |
221 |
ttgttttattatcgttatacatgtatattttgaactcaagtggcttttgaaatgttattatcatgagctttaacttcgtgctgacactgttatattcatc |
320 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
29946614 |
ttgtattattatcgttatacatgtatattttgaattcaagtggcttttgaaatgttattatcatgagctttaacttcgtgctgaaactgttatattcatc |
29946515 |
T |
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| Q |
321 |
ttgaatatatattctatcgatggctactgattac |
354 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
29946514 |
ttgaatatatattctatcgatggctactgattac |
29946481 |
T |
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