View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3875_low_8 (Length: 335)
Name: NF3875_low_8
Description: NF3875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3875_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 3 - 211
Target Start/End: Original strand, 26272529 - 26272735
Alignment:
| Q |
3 |
atgaaggagctttttgatactggttttcttgatggtgttcctgttgtttatgtcatgttgtttacgttgtttaannnnnnnnnncgtggcctctccttca |
102 |
Q |
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| T |
26272529 |
atgaaggagcttttttatactgattttcttgatggtgttcttgttgtttatgtcctgttgtttacgtcgttta--tttttttccctgggcttttccttca |
26272626 |
T |
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| Q |
103 |
gatcccgttttgggttgtttttcttgttcctacggcggcagagagttggtcagtggtggcgccgctgttgattggtggcagcaaaatcactgttgtttcg |
202 |
Q |
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| T |
26272627 |
gatcccattttgggttgtttttcttgttcctacggcggcggggagttcgttggtggtagtgctgccgttgtttggtggcagcgcagtcactgctatttca |
26272726 |
T |
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| Q |
203 |
tcggagtcg |
211 |
Q |
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||||||||| |
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| T |
26272727 |
tcggagtcg |
26272735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 26272798 - 26272846
Alignment:
| Q |
274 |
ggataagagaccattatttccatggcttctcgttgagcatctgttcttc |
322 |
Q |
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| T |
26272798 |
ggatacgagaccattatttccatagcttctcattgaccctctgttcttc |
26272846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 184
Target Start/End: Complemental strand, 43712332 - 43712153
Alignment:
| Q |
3 |
atgaaggagctttttgatactggttttcttgatggtgttcctgttgtttatgtcatgttgtttacgttgtttaannnnnnnnnncgtggcctc-tccttc |
101 |
Q |
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||||||| |||| || |||||| ||||||||||||||||| ||||||||||||| |||||||||||| |||||| | ||| ||| |||||| |
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| T |
43712332 |
atgaaggtgcttatttatactgattttcttgatggtgttcttgttgtttatgtcctgttgtttacgtcgtttaa---ttttttccctgggctcttccttc |
43712236 |
T |
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| Q |
102 |
agatcccgttttgggttgtttttcttgttcctacggcggcagagagttggtcagtggtggcgccgctgttgattggtggcagc |
184 |
Q |
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| T |
43712235 |
atatcccattttgggttgtttttcttgctcctacggcggcggggagttagtcggtggtagtgccgccgttgtttggtggcagc |
43712153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 322
Target Start/End: Complemental strand, 43712063 - 43712015
Alignment:
| Q |
274 |
ggataagagaccattatttccatggcttctcgttgagcatctgttcttc |
322 |
Q |
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||||| |||||||||| ||||||||||||||||||| | |||||||||| |
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| T |
43712063 |
ggatatgagaccattaattccatggcttctcgttgaccctctgttcttc |
43712015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 27196436 - 27196491
Alignment:
| Q |
1 |
ctatgaaggagctttttgatactggttttcttgatggtgttcctgttgtttatgtc |
56 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
27196436 |
ctatgaaggagctttttgatactggttttcttgatggtgttccggttgtttatgtc |
27196491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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