View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3875_low_9 (Length: 297)
Name: NF3875_low_9
Description: NF3875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3875_low_9 |
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| [»] scaffold0001 (1 HSPs) |
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| [»] scaffold0643 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 114; Significance: 8e-58; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 3 - 136
Target Start/End: Complemental strand, 1449472 - 1449339
Alignment:
| Q |
3 |
ttgtatttgtaattcaaagtgtttttaggtgtattataaagttgatttgtattccataaagaaataaatgaattgtctctacctttgaattttattttat |
102 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1449472 |
ttgtatttgtaattcaaaatatttttaggtgtattataaagttgatttgtatttcttaaagaaataaatgaattgtctctacctttgaatttcattttat |
1449373 |
T |
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| Q |
103 |
tttcaagaacattgtttaagttgttttattaaaa |
136 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
1449372 |
tttcaagaacattgtttaagttgttttattaaaa |
1449339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 14609772 - 14609833
Alignment:
| Q |
50 |
tgtattccataaagaaataaatgaattgtctctacctttgaattttattttattttcaagaa |
111 |
Q |
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|||||||||| ||||||||| |||||||||||||||||| ||||||||||||||| |||||| |
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| T |
14609772 |
tgtattccattaagaaataagtgaattgtctctacctttcaattttattttatttccaagaa |
14609833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 16029193 - 16029254
Alignment:
| Q |
50 |
tgtattccataaagaaataaatgaattgtctctacctttgaattttattttattttcaagaa |
111 |
Q |
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|||||||||| | ||||||| ||| |||||||||||||| |||||||||||||||| ||||| |
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| T |
16029193 |
tgtattccattaggaaataagtgatttgtctctacctttcaattttattttatttttaagaa |
16029254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 11447329 - 11447226
Alignment:
| Q |
3 |
ttgtatttgtaattcaaagtgtttttaggtgtattataaagttgatttgtattccataaagaaataaatgaattgtctctacctttgaattttattttat |
102 |
Q |
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|||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11447329 |
ttgtatttgtaattcaaaatatttttaggtgtattataaaattgatttgtattccataaagaaataaatgaattgtctctacctttgaattttattttat |
11447230 |
T |
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| Q |
103 |
tttc |
106 |
Q |
| |
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|||| |
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| T |
11447229 |
tttc |
11447226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 8541762 - 8541632
Alignment:
| Q |
5 |
gtatttgtaattcaaagtgtttttaggtgtattataaagttgatttgtattccataaagaaataaatgaattgtctctacctttgaattttattttattt |
104 |
Q |
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|||||| | ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||| ||||||||||||||| |
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| T |
8541762 |
gtatttattattcaaaatatttttaggtgtattataaagttgatttgtattccataaagaaataaatgaa-tatccgtacctttaaattttattttattt |
8541664 |
T |
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| Q |
105 |
tcaagaacattgtttaagttgttttattaaaa |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
8541663 |
tcaagaacattgtttaagttgttttattaaaa |
8541632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 8607001 - 8606871
Alignment:
| Q |
5 |
gtatttgtaattcaaagtgtttttaggtgtattataaagttgatttgtattccataaagaaataaatgaattgtctctacctttgaattttattttattt |
104 |
Q |
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|
|||||| | ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||| ||||||||||||||| |
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| T |
8607001 |
gtatttattattcaaaatatttttaggtgtattataaagttgatttgtattccataaagaaataaatgaa-tatccgtacctttaaattttattttattt |
8606903 |
T |
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| Q |
105 |
tcaagaacattgtttaagttgttttattaaaa |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
8606902 |
tcaagaacattgtttaagttgttttattaaaa |
8606871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 3928809 - 3928715
Alignment:
| Q |
6 |
tatttgtaattcaaagtgtttttaggtgtattataaagttgatttgtattccataaagaaataaatgaattgtctctacctttgaattttatttt |
100 |
Q |
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|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3928809 |
tatttgtaattcaaagtatttttaggtgtattataaagttgatttgtattccataaagaaataaatgaattgtctctacctttgaattttatttt |
3928715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 207 - 292
Target Start/End: Complemental strand, 3928628 - 3928543
Alignment:
| Q |
207 |
gtcttggattaaaatccgaggcgttacatttgctctcccactcttatacatcactttagtctgatggtaccccctaaccctttgat |
292 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3928628 |
gtcttggattaaaatccgaggcgttacatttggtctcccactcttatacatcactttagtccaatggtaccccctaaccctttgat |
3928543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 36 - 136
Target Start/End: Original strand, 81024 - 81124
Alignment:
| Q |
36 |
ttataaagttgatttgtattccataaagaaataaatgaattgtctctacctttgaattttattttattttcaagaacattgtttaagttgttttattaaa |
135 |
Q |
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|
||||||| ||||| |||| || || |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
81024 |
ttataaaattgatatgtactctattaagaaataaatgtattgtctctacctttgaatttaattttattttcaagaacattgtttaagttgttttattaaa |
81123 |
T |
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| Q |
136 |
a |
136 |
Q |
| |
|
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| T |
81124 |
a |
81124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0643 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0643
Description:
Target: scaffold0643; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 6229 - 6169
Alignment:
| Q |
68 |
aaatgaattgtctctacctttgaattttattttattttcaagaacattgtttaagttgttt |
128 |
Q |
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|
|||| ||||| ||| |||||| ||||||||||||||||||||| | ||||||||||||| |
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| T |
6229 |
aaattaattggctcgacctttcgattttattttattttcaagaatttcgtttaagttgttt |
6169 |
T |
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