View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3876_high_11 (Length: 275)
Name: NF3876_high_11
Description: NF3876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3876_high_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 275
Target Start/End: Original strand, 50212727 - 50212985
Alignment:
| Q |
17 |
cactacttagagcagagttttaactaataaatagtgtcaatgtcattgaagaaaagagataaaagacgttatcgaaaaaagaatatacctccagtttttg |
116 |
Q |
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| T |
50212727 |
cactacttagagcagagttttaactaataaatagtgtcaatgtcattgaagaaaagagataaaagacgttatcgaaaaaagaatatacctccagtttttg |
50212826 |
T |
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| Q |
117 |
gaaatccgaaatggtaagtggttgcaaatagccgaggatcaatacagtaaacaggcaataaagtttgtgaggaaagccaagccttgtagagagtttcatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50212827 |
gaaatccgaaatggtaagtggttgcaaatagccgaggatcaatacagtaaacaggcaataaagtttgtgaggaaagccaagccttgtagagagtttcatt |
50212926 |
T |
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| Q |
217 |
atccaaaactctgagatcgtttctaaaccacacgattgctgtacctttgctactcctct |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
50212927 |
atccaaaactctgagatcgtttctaaaccacacgattgctgtacctttaccactcctct |
50212985 |
T |
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