View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3876_high_16 (Length: 216)
Name: NF3876_high_16
Description: NF3876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3876_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 43462787 - 43462605
Alignment:
| Q |
19 |
ttttcacaatcctatcaaacaactcacctcctttacataattccatgacaatataaacaacatcagaatcttcataaactccttttatacatatcacatt |
118 |
Q |
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| T |
43462787 |
ttttcacaatcctatcaaacaactcacctcctttacataattccatgacaatataaacaacatcagaatcttcataaactccttttatacatatcacatt |
43462688 |
T |
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| Q |
119 |
tggactcccaaccaagtgatgcattatcttaatctccatcctcacatcctctacatcatcatcttctaacaatttcacctttg |
201 |
Q |
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| T |
43462687 |
tagactcccaaccaagtgatgcattatcttaatttccctcctcacatcctctacatcatcatcttctaacaatttcacctttg |
43462605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 23 - 177
Target Start/End: Complemental strand, 43453344 - 43453190
Alignment:
| Q |
23 |
cacaatcctatcaaacaactcacctcctttacataattccatgacaatataaacaacatcagaatcttcataaactccttttatacatatcacatttgga |
122 |
Q |
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| T |
43453344 |
cacaatcctgtcaaacaactcacctccttcacataattccattacaatataaacaacgaccggatcttcataagctccttttattgatatcacatttgga |
43453245 |
T |
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| Q |
123 |
ctcccaaccaagtgatgcattatcttaatctccatcctcacatcctctacatcat |
177 |
Q |
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| T |
43453244 |
atcccaactaagtgatgcattatttcaatctccctcctcacatcctctatatcat |
43453190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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