View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3876_high_7 (Length: 328)

Name: NF3876_high_7
Description: NF3876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3876_high_7
NF3876_high_7
[»] chr4 (4 HSPs)
chr4 (165-315)||(4167544-4167692)
chr4 (19-108)||(4167749-4167838)
chr4 (20-86)||(4174914-4174979)
chr4 (185-255)||(4174756-4174826)
[»] chr3 (4 HSPs)
chr3 (197-286)||(10018774-10018863)
chr3 (197-286)||(10123314-10123403)
chr3 (195-252)||(10180005-10180062)
chr3 (197-286)||(10256088-10256177)
[»] chr7 (4 HSPs)
chr7 (195-251)||(23613771-23613827)
chr7 (195-237)||(23613717-23613759)
chr7 (203-283)||(8083389-8083469)
chr7 (203-283)||(41832664-41832744)
[»] chr6 (1 HSPs)
chr6 (195-283)||(24249770-24249858)
[»] chr5 (2 HSPs)
chr5 (203-283)||(21254206-21254286)
chr5 (203-283)||(21256678-21256758)


Alignment Details
Target: chr4 (Bit Score: 124; Significance: 9e-64; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 165 - 315
Target Start/End: Complemental strand, 4167692 - 4167544
Alignment:
Q  165 ttgtaaccacctcttattagaaggtatatgttcactcatttgtaatattttattttcatcgataaaaagagttagtaacttttctctcatttcttctatt 264  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4167692 ttgtaaccacctcttattagaaggtatatgttcattcatttgtaatattctattttcatcgataaaaagagttagtaacttttctctcattccttctatt 4167593  T
Q  265 gatgccacgtttcgtaacaacatgatcaacgattaagtttcatatgaaatc 315  Q
    |||||||||||||||||||  ||||||||||| ||||||||||||||||||    
T  4167592 gatgccacgtttcgtaaca--atgatcaacgactaagtttcatatgaaatc 4167544  T

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Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 4167838 - 4167749
Alignment:
Q  19 ggattaggatcctcttatgttagaaaaaatcataaggaaataatgtgaaagatcttggctaagtttctaagtttctaacattccacgtac 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4167838 ggattaggatcctcttatgttagaaaaaatcataaggaaataatgtgaaagatcttggctaagtttctaagtttctaacattccacgtac 4167749  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 4174979 - 4174914
Alignment:
Q  20 gattaggatcctcttatgttagaaaaaatcataaggaaataatgtgaaagatcttggctaagtttct 86  Q
    |||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||    
T  4174979 gattaggatcctcttatgtt-gaaaaaatcataagaaaataatgtggaagatcttggctaagtttct 4174914  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 255
Target Start/End: Complemental strand, 4174826 - 4174756
Alignment:
Q  185 aaggtatatgttcactcatttgtaatattttattttcatcgataaaaagagttagtaacttttctctcatt 255  Q
    ||||||| ||||||||||||||||||||| |||||||||  ||| ||||||||  ||||||||||||||||    
T  4174826 aaggtatttgttcactcatttgtaatattctattttcattaatacaaagagtttctaacttttctctcatt 4174756  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 286
Target Start/End: Complemental strand, 10018863 - 10018774
Alignment:
Q  197 cactcatttgtaatattttattttcatcgataaaaagagttagtaacttttctctcatttcttctattgatgccacgtttcgtaacaaca 286  Q
    |||||||||||||||||| |||| |||| ||| |||||||| || | ||||||||| ||  ||| || ||||||| ||||| ||||||||    
T  10018863 cactcatttgtaatatttcatttccatcaatacaaagagtttgttagttttctctccttctttccatggatgccatgtttcctaacaaca 10018774  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 286
Target Start/End: Complemental strand, 10123403 - 10123314
Alignment:
Q  197 cactcatttgtaatattttattttcatcgataaaaagagttagtaacttttctctcatttcttctattgatgccacgtttcgtaacaaca 286  Q
    |||||||||||||||||| |||| |||| ||| |||||||| || | ||||||||| ||  ||  || ||||||| ||||| ||||||||    
T  10123403 cactcatttgtaatatttcatttccatcaatacaaagagtttgttagttttctctccttcttttcatggatgccatgtttcctaacaaca 10123314  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 252
Target Start/End: Complemental strand, 10180062 - 10180005
Alignment:
Q  195 ttcactcatttgtaatattttattttcatcgataaaaagagttagtaacttttctctc 252  Q
    |||||||||||||||||||| |||| |||| ||| |||||||| || | |||||||||    
T  10180062 ttcactcatttgtaatatttcatttccatcaatacaaagagtttgttagttttctctc 10180005  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 286
Target Start/End: Complemental strand, 10256177 - 10256088
Alignment:
Q  197 cactcatttgtaatattttattttcatcgataaaaagagttagtaacttttctctcatttcttctattgatgccacgtttcgtaacaaca 286  Q
    |||||||||||||||||| |||| |||| ||| ||| |||| || | ||||||||| ||  ||| || ||||||| ||||| ||||||||    
T  10256177 cactcatttgtaatatttcatttccatcaatacaaaaagtttgttagttttctctccttctttccatggatgccatgtttcctaacaaca 10256088  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 23613771 - 23613827
Alignment:
Q  195 ttcactcatttgtaatattttattttcatcgataaaaagagttagtaacttttctct 251  Q
    |||||||||||||||||||| |||| |||| |||||||||||| || | ||||||||    
T  23613771 ttcactcatttgtaatatttcatttccatcaataaaaagagtttgttagttttctct 23613827  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 237
Target Start/End: Original strand, 23613717 - 23613759
Alignment:
Q  195 ttcactcatttgtaatattttattttcatcgataaaaagagtt 237  Q
    |||||||||||||||||||| |||| |||| ||||||||||||    
T  23613717 ttcactcatttgtaatatttcatttccatcaataaaaagagtt 23613759  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 283
Target Start/End: Complemental strand, 8083469 - 8083389
Alignment:
Q  203 tttgtaatattttattttcatcgataaaaagagttagtaacttttctctcatttcttctattgatgccacgtttcgtaaca 283  Q
    |||||||||||| ||||||||| ||| ||||||||  | | ||||||||| || |||| || ||||||| ||||| |||||    
T  8083469 tttgtaatatttcattttcatcaatagaaagagttttttagttttctctccttccttccatggatgccatgtttcctaaca 8083389  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 283
Target Start/End: Original strand, 41832664 - 41832744
Alignment:
Q  203 tttgtaatattttattttcatcgataaaaagagttagtaacttttctctcatttcttctattgatgccacgtttcgtaaca 283  Q
    |||||||||||  ||||||||| ||| ||||||||  | | |||||||||||| |||| || ||||||| ||||| |||||    
T  41832664 tttgtaatattcaattttcatcaatagaaagagtttcttagttttctctcattccttccatggatgccatgtttcctaaca 41832744  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 283
Target Start/End: Original strand, 24249770 - 24249858
Alignment:
Q  195 ttcactcatttgtaatattttattttcatcgataaaaagagttagtaacttttctctcatttcttctattgatgccacgtttcgtaaca 283  Q
    |||||||||||||||||||  |||| |||  ||| |||||||| || | ||||||||||||  ||  |||||||||| ||||| |||||    
T  24249770 ttcactcatttgtaatattccatttccattaatacaaagagtttgttagttttctctcattctttacattgatgccatgtttcctaaca 24249858  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 283
Target Start/End: Original strand, 21254206 - 21254286
Alignment:
Q  203 tttgtaatattttattttcatcgataaaaagagttagtaacttttctctcatttcttctattgatgccacgtttcgtaaca 283  Q
    |||||||||||   |||||||| ||| |||||||| || ||||||||||| || |||| || ||||||| ||||| |||||    
T  21254206 tttgtaatattcctttttcatcaatagaaagagtttgttacttttctctccttccttccatggatgccatgtttcctaaca 21254286  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 283
Target Start/End: Original strand, 21256678 - 21256758
Alignment:
Q  203 tttgtaatattttattttcatcgataaaaagagttagtaacttttctctcatttcttctattgatgccacgtttcgtaaca 283  Q
    |||||||||||  ||||||||| ||| |||||||| || | ||||||||| || |||| || ||||||| ||||| |||||    
T  21256678 tttgtaatattccattttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaaca 21256758  T

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