View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3876_high_8 (Length: 311)
Name: NF3876_high_8
Description: NF3876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3876_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 11 - 291
Target Start/End: Complemental strand, 8784047 - 8783767
Alignment:
| Q |
11 |
cataggggattcattttcttagtcgaaccatcatatcctagaaaaataatct-cctatataggtagactgtagctcaatttaagagctagcttgcctcta |
109 |
Q |
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| T |
8784047 |
cataggggattcattttcttagtctaaccatcatatcctagaaaaatagtctacctatataggtagactgtagctcgatttaagagctagcttgcctcta |
8783948 |
T |
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| Q |
110 |
aggggatttgttttcttagttgaacgatcataaaccagaaagagctccagatttgaagtcattaaaacccatcaccaccatgttaacgatatgcaacaat |
209 |
Q |
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| T |
8783947 |
aggggattcgttttcttagttga-cgatcatacaccagaaagagctccagatttgaagtcattaaaacccatcaccaccatgttaacgatatgcaacaat |
8783849 |
T |
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| Q |
210 |
atagtttataaaattattgcttcaaaggggcaacccagttctttaaatctcttgcaatcgcagggttcaaatccaaggaatc |
291 |
Q |
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| T |
8783848 |
atagtttataaaattattgcttcaaaggggcaacccagttctttaaatctctttcaatcgcagggttcaaatccaaggaatc |
8783767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 212 - 290
Target Start/End: Complemental strand, 8790039 - 8789961
Alignment:
| Q |
212 |
agtttataaaattattgcttcaaaggggcaacccagttctttaaatctcttgcaatcgcagggttcaaatccaaggaat |
290 |
Q |
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| T |
8790039 |
agtttataaaactattgcatcaaaggcgcaacccagtgctttaaatctcttgccatagcagggttcaaatccaaggaat |
8789961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 11 - 107
Target Start/End: Complemental strand, 8790221 - 8790124
Alignment:
| Q |
11 |
cataggggattcattttcttagtcgaaccatcatatcctagaaaaataatctcc-tatataggtagactgtagctcaatttaagagctagcttgcctc |
107 |
Q |
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| T |
8790221 |
cataggggattcattgtcttagaccagcgatcataccccagaaaaataatctacatatataggtagaccgtagttcaatttaagggctagcttacctc |
8790124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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