View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3876_high_9 (Length: 282)
Name: NF3876_high_9
Description: NF3876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3876_high_9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 282
Target Start/End: Complemental strand, 19713875 - 19713604
Alignment:
| Q |
11 |
cataggcattctctcaggcctactcaatgaaatcacacctccttgggttgtcttaacaattggtggtcttctcaacttttttggctatttcatgatttgg |
110 |
Q |
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| T |
19713875 |
cataggcattctctcaggcctactcaatgaaatcacacctccttgggttgtcttaacaattggtggtcttctcaacttttttggctatttcatgatttgg |
19713776 |
T |
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| Q |
111 |
cttgcagtcacaagaaaaatccctaaacctccaatatggaatatgtgcttatacatattcattggagcaaattctcattgttcaaccaacactggagctt |
210 |
Q |
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| T |
19713775 |
cttgcagtcacaagaaaaatcccaaaacctccaatatggaatatgtgcttatacatatttattggagcaaattctcattgttcaaccaacactggagctt |
19713676 |
T |
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| Q |
211 |
tagtcaccagtgtaaagaatttccctggtagtagaggtgttgtcataggccttttgagtggttatcttggtt |
282 |
Q |
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| T |
19713675 |
tagtcaccagtgtaaagaatttccctggtagtagaggtgttgtcataggccttttgagtggttatcttggtt |
19713604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 282
Target Start/End: Original strand, 21776524 - 21776796
Alignment:
| Q |
10 |
gcataggcattctctcaggcctactcaatgaaatcacacctccttgggttgtcttaacaattggtggtcttctcaacttttttggctatttcatgatttg |
109 |
Q |
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| T |
21776524 |
gcataggaattctctcaggtctactcaatgaaatcacacctccatgggttgtcttaacaattggtggtgttctcaacttttttggctatttcatgatttg |
21776623 |
T |
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| Q |
110 |
gcttgcagtcacaagaaaaatccctaaacctccaatatggaatatgtgcttatacatattcattggagcaaattctcattgttcaaccaacactggagct |
209 |
Q |
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| T |
21776624 |
gcttgcagtcacaagaaaaatctcgaaaccgcaaatatggaatatgtgcttatacacattcattggagccaattcgcattgttcaaccaacactggagtt |
21776723 |
T |
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| Q |
210 |
ttagtcaccagtgtaaagaatttccctggtagtagaggtgttgtcataggccttttgagtggttatcttggtt |
282 |
Q |
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| T |
21776724 |
gtagtcaccagtgtaaggaatttccctggtagtagaggtattgtcataggtcttttgagtggttatcttggtt |
21776796 |
T |
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