View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3876_low_13 (Length: 250)

Name: NF3876_low_13
Description: NF3876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3876_low_13
NF3876_low_13
[»] chr4 (1 HSPs)
chr4 (1-73)||(35234561-35234627)
[»] chr8 (1 HSPs)
chr8 (6-46)||(444537-444577)
[»] chr7 (1 HSPs)
chr7 (6-46)||(38321415-38321455)
[»] chr6 (1 HSPs)
chr6 (6-46)||(4577918-4577958)
[»] chr3 (1 HSPs)
chr3 (6-46)||(47415879-47415919)


Alignment Details
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 35234627 - 35234561
Alignment:
Q  1 atattaaatatttatatctgtaattttaattaaaattaaaatttcacaaagctaatattcatagtttatacac 73  Q
    |||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||| |||||||    
T  35234627 atattaaatatttatatctgtaattttaattaa------aatttcacaaagctaatattcatagtctatacac 35234561  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 444537 - 444577
Alignment:
Q  6 aaatatttatatctgtaattttaattaaaattaaaatttca 46  Q
    |||||||||||||| |||||||||| ||||| |||||||||    
T  444537 aaatatttatatctttaattttaatcaaaatcaaaatttca 444577  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 38321415 - 38321455
Alignment:
Q  6 aaatatttatatctgtaattttaattaaaattaaaatttca 46  Q
    |||||||||||||| |||||||||| ||||| |||||||||    
T  38321415 aaatatttatatctataattttaataaaaatcaaaatttca 38321455  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 4577958 - 4577918
Alignment:
Q  6 aaatatttatatctgtaattttaattaaaattaaaatttca 46  Q
    |||||| ||||||| |||||||||| |||||||||||||||    
T  4577958 aaatatctatatctataattttaatcaaaattaaaatttca 4577918  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 47415919 - 47415879
Alignment:
Q  6 aaatatttatatctgtaattttaattaaaattaaaatttca 46  Q
    |||||| ||||||| |||||||||| |||||||||||||||    
T  47415919 aaatatctatatctataattttaatcaaaattaaaatttca 47415879  T

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