View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3876_low_2 (Length: 448)
Name: NF3876_low_2
Description: NF3876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3876_low_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 13 - 448
Target Start/End: Original strand, 36819357 - 36819792
Alignment:
| Q |
13 |
aatatatatgaagtaaaagaagaaaaataacaagagtagcagcgtcaccttactgatatttatcttaccaggaaaagtattccccattcagacaaaactt |
112 |
Q |
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| T |
36819357 |
aatatatatgaagtaaaagaagaaaaataacaagagtagcagcgtcaccttactgatatttatcttaccaggaaaaggattccccattcagacaaaactt |
36819456 |
T |
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| Q |
113 |
taacatcttcaaggttcctaattaaaccaaactgatttagcaccactccagcacagaagaaaccaagtatctgaaaacaatagccattttatttatttca |
212 |
Q |
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| T |
36819457 |
taacatcttcaagggtcctaattaaaccaaactgatttagcaccactccagcacagaagaaaccaagtatctgaaaacaatagccattatatttatttca |
36819556 |
T |
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| Q |
213 |
atcatacatatatagggcaataaattatgaannnnnnnnacatcatctaatgcctgtgtctgtacgattaacttaaaaatgcattaatccatattaataa |
312 |
Q |
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| T |
36819557 |
atcatacatatatagggcaataaattatgaattctttttacatcatctaatgcctgtgtctgtacgattaacttaaaaatgcattaatccatattaataa |
36819656 |
T |
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| Q |
313 |
agagcattacatgataatgattattgagaaatgagattatgacaaagccatcaagaaattcttacaggactggctttaattaatttgaatgaggggacaa |
412 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36819657 |
agagcattacatgataataattattgagaaatgagattatgacaaagccatcaagaaattcttacaggactggctttaattaatttgaatgaggggacaa |
36819756 |
T |
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| Q |
413 |
taaagacagtgacagccaagaaagtaagagtatcca |
448 |
Q |
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| T |
36819757 |
taaagacagtgacggccaagaaagtaagagtatcca |
36819792 |
T |
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