View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3876_low_3 (Length: 409)
Name: NF3876_low_3
Description: NF3876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3876_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 17444318 - 17443917
Alignment:
| Q |
1 |
tttaagtggaactgcctttggttcccttgcaaatccaaaccaagctgataatcttcgcaatgctgggaaaattaacattcggtacacaaggtatttaggg |
100 |
Q |
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| T |
17444318 |
tttaagtggaactgcctttggttcccttgcaaatccaaaccaagctgataatcttcgcaatgctgggaaaattaacattcggtacacaaggtatttaggg |
17444219 |
T |
|
| Q |
101 |
tttaaacccggcccctgcatatagcgcgtgtgtatgtgnnnnnnn--cttttaaattagtattagtatgacaaacactacacttataattcctcccataa |
198 |
Q |
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| T |
17444218 |
tttaaacccggcccctacatatcgcgcgtgtgtatgtgtttttttttctttttcattagtattagtatgacaaacactacacttataattcctcccataa |
17444119 |
T |
|
| Q |
199 |
tttcaacttgcagggtttcatgctcttttggaaattcaatagtcttcacaattgataatggagccaacccttactattttgcaacagaaatagaatatga |
298 |
Q |
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| T |
17444118 |
tttcaacttgcagggttgcatgctcttttggaaattcaatagtcttcacaattgataatggagccaacccatactgttttgcaacagaaatagaatatga |
17444019 |
T |
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| Q |
299 |
aaatggaaatggtgacctagttcaagttgaattgagccaatcaaacacatggcatccaatgtttcgttcttggggttcaagatgggcttttaacacaggt |
398 |
Q |
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| T |
17444018 |
aaatggaaatggtgacctagttcaagttgaattgagccaatcaaacacatggcatccaatgtttcgttcttggggttcaagatgggcttttaacacaggt |
17443919 |
T |
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| Q |
399 |
tc |
400 |
Q |
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| T |
17443918 |
tc |
17443917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 252 - 400
Target Start/End: Complemental strand, 9628929 - 9628781
Alignment:
| Q |
252 |
gataatggagccaacccttactattttgcaacagaaatagaatatgaaaatggaaatggtgacctagttcaagttgaattgagccaatcaaacacatggc |
351 |
Q |
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|||| |||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||| | || || ||||||| ||||||| | |||| |
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| T |
9628929 |
gatagtggagccaacccatactattttgctacagaaatagaatatgaaaatggagatggtgacattgtatctgtagaattgaatcaatcaagaagatgga |
9628830 |
T |
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| Q |
352 |
atccaatgtttcgttcttggggttcaagatgggcttttaacacaggttc |
400 |
Q |
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| T |
9628829 |
ttccaatgcaacgttcttggggtgcaagatgggctttgaactcaggttc |
9628781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 9630193 - 9630121
Alignment:
| Q |
3 |
taagtggaactgcctttggttcccttgcaaatccaaaccaagctgataatcttcgcaatgctgggaaaattaa |
75 |
Q |
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||||||||||||| |||||||||||||||||| ||| ||| |||||||||| |||||||| | |||||| |
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| T |
9630193 |
taagtggaactgcatttggttcccttgcaaataatggccaggctaataatcttcgtaatgctggaagaattaa |
9630121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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