View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3876_low_4 (Length: 408)
Name: NF3876_low_4
Description: NF3876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3876_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 11 - 392
Target Start/End: Original strand, 2171949 - 2172338
Alignment:
| Q |
11 |
catcatcatggaataaactatattttataattcttttagtgagatgatgacacaaaataccaccaacctagctgattagctgggatatcttagtaaatta |
110 |
Q |
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| T |
2171949 |
catcatcatggaataaactatattttataattcttttggtgagatgatgacacaaaataccaccaacctagctgattagctgggatatcttagtaaatta |
2172048 |
T |
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| Q |
111 |
g--------catcattttaaagtgttgatgataacaatacgtgcatgttcttagtaagataaggatagggatacaattttatttcaagataatctcacca |
202 |
Q |
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| T |
2172049 |
gtaaaagatcatcattttaaagtgttgatgataacaatacgtgcatgttcttagtaagatagggatagggatacaattttatttcaagataatctcatca |
2172148 |
T |
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| Q |
203 |
ttattgacattgacacacacatatatgcataaagcactgttaatatttcatcaagatagtgggagaaaattgtaaaataaattcatcttcacaaagctta |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2172149 |
ttattgacattgacacacacatatatgcataaagcactattaatatttcatcaagatagtgggagaaaattgtaaaataaattcatcttcacaaagctta |
2172248 |
T |
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| Q |
303 |
attgcctcctcttcttgaagtgttaccattaccacccttcctaatggaccctcatcatttgatgttggaagaatcaaaacatgtccttct |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2172249 |
attgcctcctcttcttgaagtgttaccattaccacccttcctaatggaccctcatcatttgatgttggaagaatcaaaacatgtccttct |
2172338 |
T |
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