View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3876_low_6 (Length: 343)
Name: NF3876_low_6
Description: NF3876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3876_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 12 - 325
Target Start/End: Original strand, 36819774 - 36820087
Alignment:
| Q |
12 |
aagaaagtaagagtatccaatcctaaatcattgatgacttcaaccgcactagcaacatcatacgtaacatttgtctgtaaccgatcccaccgtagttgcc |
111 |
Q |
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| T |
36819774 |
aagaaagtaagagtatccaatcctaaatcattgatgacttcaaccgcactagcaacatcatacgtaacatttgtctgtaaccgatcccaccgtagttgcc |
36819873 |
T |
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| Q |
112 |
tatgcttggagaaataggataaattccgaccagaaaatgaaggagcgtccagaggccttcttctagtgaatttttctgatgcagcagtactttgacattg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36819874 |
tatgcttggagaaataggataaattccgaccagaaaatgaaggagcatccagaggccttcttctagtgaatttttctgatgcagcagtactttgacattg |
36819973 |
T |
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| Q |
212 |
aaacggaacttgcttgtcaactgaataatgcgttaacatagaacttgtacgaatccgcgaaacagcacgagaataaccgggactcttttgtttggtcagg |
311 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36819974 |
aaacggaacttgcttgtcaactgaataatgcgtgaacatagaacttgtacgaatccgcgaaacagcacgagaataaccgggactcttttgtttggtcagg |
36820073 |
T |
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| Q |
312 |
tcatatccctgcag |
325 |
Q |
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|||||||||||||| |
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| T |
36820074 |
tcatatccctgcag |
36820087 |
T |
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