View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3876_low_9 (Length: 306)
Name: NF3876_low_9
Description: NF3876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3876_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 5 - 288
Target Start/End: Complemental strand, 45509372 - 45509086
Alignment:
| Q |
5 |
ggtagataatactaagagaaaagttgaaaaaatagaggtgaaagaacttctctttccatttatttggttnnnnnnnngtgggaagagaaatttaattatt |
104 |
Q |
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| T |
45509372 |
ggtatataataataagagaaaagttgaaaaaatagaggcgaaagaacttctctttccatttatttggttaaaaaaaagtgggaagagaaatttaattatt |
45509273 |
T |
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| Q |
105 |
ttgaaaatgatatatagaattttactccgatgagaagtttcatccctaagctgcttaactcacaaatataatttatctctc---ttctatatttcttgtg |
201 |
Q |
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| T |
45509272 |
ttgaaaatgatatatagaattttactccaatgagaagtttcatccctaagctgcttaactcacaaatataatttatctctcttcttctatatttcttgtg |
45509173 |
T |
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| Q |
202 |
gactctcccatttttacaattttaaatgcataaaattaatattataatcctattgaactgaagtttcttaaattagcaactttgact |
288 |
Q |
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| T |
45509172 |
gactctcccatttttacaattttaaatgcataaaattaatattataatcctgttgaactgaagtttcttaaatcagcaactttgact |
45509086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 5 - 288
Target Start/End: Original strand, 19845044 - 19845326
Alignment:
| Q |
5 |
ggtagataatactaagagaaaagttgaaaaaatagaggtgaaagaacttctctttccatttatttggttnnnnnnnn-gtgggaagagaaatttaattat |
103 |
Q |
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| T |
19845044 |
ggtatataataataagagaaaagttgaaaaaatggaggcgaaggaacttctctttccatttatttggttaaaaaaaaagtgggaagagaaatttaattat |
19845143 |
T |
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| Q |
104 |
tttgaaaatgatatatagaattttactccgatgagaagtttcatccctaagctgcttaactcacaaatataatttatctctcttctatatttcttgt-gg |
202 |
Q |
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| T |
19845144 |
tttgaaaatgatatatagaattttactccaatgagaagtttcatccctaagctgcttaactcacaaatataatttatct---ttctatatttcttgtggg |
19845240 |
T |
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| Q |
203 |
actctcccatttttacaattttaaatgcataaaattaatattataatcctattgaactgaagtttcttaaattagcaactttgact |
288 |
Q |
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| T |
19845241 |
actctcccatttttacaattttaaatgcataaaattaatattataatcctattgaactgaagtttcttaaattagcaactttgact |
19845326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 242
Target Start/End: Original strand, 40946560 - 40946645
Alignment:
| Q |
158 |
cttaactcacaaatataatttatctctcttctatatttcttgtggactctcccatttttacaatttt-aaatgcataaaattaata |
242 |
Q |
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|||||| |||| |||| |||| ||||||||| ||||||| ||| || |||||||||| ||| |||| ||||||||||||| |||| |
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| T |
40946560 |
cttaacccacatatatcatttttctctcttccatatttcatgttcacactcccattttaacactttttaaatgcataaaatcaata |
40946645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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