View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3877_low_1 (Length: 406)
Name: NF3877_low_1
Description: NF3877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3877_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 25 - 391
Target Start/End: Original strand, 18057173 - 18057539
Alignment:
| Q |
25 |
ctcttgtgacatttctcgaatgcaacgatgttacgaaacacggttcctctatgatcaccaatgtacaatggaggaatagttagttgcattatcatgactc |
124 |
Q |
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| T |
18057173 |
ctcttgtgacatttctcgaatgcaacgatgttacgaaacacggttcctctatgatcaccaatgtacaatggaggaatagttagttgctttatcataactc |
18057272 |
T |
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| Q |
125 |
cccannnnnnnccaaagcttatatccaacaattctctattctcacaagctttaattttcacacccccttcttttagttcggttattgaatgaatcatctc |
224 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18057273 |
cccatttttttccaaagcttatatccaacaattctctattctcacaagctttaattttcacacccccttcttttagttcggttattgaatgaatcatctc |
18057372 |
T |
|
| Q |
225 |
gctctgacgtcctctcagctcttcgccgatgagtttcggtcttatgttgtatctaagaagatcaagaacatgttcaactttgtacttgtaagatgtttga |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
18057373 |
gctctgacgtcctctcagctcttcgccgatgagtttcggtcttatgttgtatctaagaagatcaagaacatgttcaactttatacttgtaagatgtttga |
18057472 |
T |
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| Q |
325 |
catttaggggtttttctcgactcgggtttaagcaaaccgtagaagaatttgaaggcaagagtgttga |
391 |
Q |
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| T |
18057473 |
catttaggggtttttctcgactcgggtttaagcaaaccgtagaagaatttgaaggaaagagtgttga |
18057539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 25 - 377
Target Start/End: Original strand, 15733786 - 15734138
Alignment:
| Q |
25 |
ctcttgtgacatttctcgaatgcaacgatgttacgaaacacggttcctctatgatcaccaatgtacaatggaggaatagttagttgcattatcatgactc |
124 |
Q |
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|||||||||||||| || |||||||| ||||| ||||| || || ||||| ||||||||||||||||| || ||||||||||||| | ||| ||| | || |
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| T |
15733786 |
ctcttgtgacatttttcaaatgcaactatgttgcgaaaaacagtacctctgtgatcaccaatgtacaaaggtggaatagttagttcctttaccataattc |
15733885 |
T |
|
| Q |
125 |
cccannnnnnnccaaagcttatatccaacaattctctattctcacaagctttaattttcacacccccttcttttagttcggttattgaatgaatcatctc |
224 |
Q |
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|||| |||||||||||||||| ||| |||||| |||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
15733886 |
cccatttttttccaaagcttatatccatcaactctctactctcgcaggctttaattttcacacccccttcttttagttctgttattgaatgaatcatctg |
15733985 |
T |
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| Q |
225 |
gctctgacgtcctctcagctcttcgccgatgagtttcggtcttatgttgtatctaagaagatcaagaacatgttcaactttgtacttgtaagatgtttga |
324 |
Q |
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|||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
15733986 |
gctctgacatcctcttggctcttcgccaatgagtttcggtcttatgttgtatctaagaagatcaagaacatgttcaattttgaacttgtaagatgtttga |
15734085 |
T |
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| Q |
325 |
catttaggggtttttctcgactcgggtttaagcaaaccgtagaagaatttgaa |
377 |
Q |
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|||| ||||||||||| || |||| || |||||| | ||||||||||||||| |
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| T |
15734086 |
cattcaggggtttttcgtgattcggattgaagcaatcggtagaagaatttgaa |
15734138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 25 - 377
Target Start/End: Original strand, 15727767 - 15728119
Alignment:
| Q |
25 |
ctcttgtgacatttctcgaatgcaacgatgttacgaaacacggttcctctatgatcaccaatgtacaatggaggaatagttagttgcattatcatgactc |
124 |
Q |
| |
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|||||||||||||| || |||||||| ||||| ||||| || || ||||| ||||||||||||||||| || ||||||||||||| | ||| ||| | || |
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| T |
15727767 |
ctcttgtgacatttttcaaatgcaactatgttgcgaaaaacagtacctctgtgatcaccaatgtacaaaggtggaatagttagttcctttaccataattc |
15727866 |
T |
|
| Q |
125 |
cccannnnnnnccaaagcttatatccaacaattctctattctcacaagctttaattttcacacccccttcttttagttcggttattgaatgaatcatctc |
224 |
Q |
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|||| |||||||||||||||| |||||||||| ||||||| |||||| ||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
15727867 |
cccatttttttccaaagcttatatccatcaattctctactctcacatgctttagttttcacaccccctttttttagttctgttattgaatgaatcatctg |
15727966 |
T |
|
| Q |
225 |
gctctgacgtcctctcagctcttcgccgatgagtttcggtcttatgttgtatctaagaagatcaagaacatgttcaactttgtacttgtaagatgtttga |
324 |
Q |
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|||||||| |||||| | |||||||| |||||||| || ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
15727967 |
gctctgacatcctcttggttcttcgccaatgagttttggccttatgttgtatctaagaagatcaagaacatgttcaattttgaacttgtaagatgtttga |
15728066 |
T |
|
| Q |
325 |
catttaggggtttttctcgactcgggtttaagcaaaccgtagaagaatttgaa |
377 |
Q |
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|||| ||||||||||| || |||| || |||||| |||||||||| |||| |
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| T |
15728067 |
cattcaggggtttttcatgattcggattgaagcaattggtagaagaatatgaa |
15728119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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