View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3878_high_16 (Length: 328)

Name: NF3878_high_16
Description: NF3878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3878_high_16
NF3878_high_16
[»] chr3 (1 HSPs)
chr3 (15-310)||(38088775-38089070)


Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 15 - 310
Target Start/End: Complemental strand, 38089070 - 38088775
Alignment:
Q  15 aagaaccactgtttatataatgtaagagcagaagtgatggaggaaaattgtagaattagcaataatggcatttatttttaggtttatactatggtttaaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38089070 aagaaccactgtttatataatgtaagagcagaagtgatggaggaaaattgtagaattagcaataatggcatttatttttaggtttatactatggtttaaa 38088971  T
Q  115 caaaacaaaaccgttacaagcaatttgcaaagaacattagaataacctatgcattttccagaactaattaaggaatgtttaaatgctacgcacactgtcc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38088970 caaaacaaaaccgttacaagcaatttgcaaagaacattagaataacctatgcattttccagaactaattaaggaatgtttaaatgctacgcacactgtcc 38088871  T
Q  215 aatgtctattactgcttaaaacttaaaagaatacgaaccgtggattgaatttatgagcatggttatatactaaatgcaattgatcatgcatgtaac 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38088870 aatgtctattactgcttaaaacttaaaagaatacgaaccgtggattgaatttatgagcatggttatatactaaatgcaattgatcatgcatgtaac 38088775  T

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