View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3878_high_2 (Length: 734)
Name: NF3878_high_2
Description: NF3878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3878_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 667; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 667; E-Value: 0
Query Start/End: Original strand, 18 - 717
Target Start/End: Complemental strand, 45440948 - 45440245
Alignment:
| Q |
18 |
gaggggaagtttctttgtcatttat----aactagccatggatattgattttcattcatttttattgtcttccttcatcaagagtacaaagcaatttgag |
113 |
Q |
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| T |
45440948 |
gaggggaagtttctttgtcatttatttatagctagccatggatattgattttcattaatttttattgtcttccttcatcaagagtacaaagcaatttgag |
45440849 |
T |
|
| Q |
114 |
cttgactatagagataaaggaaggccaggacttggaatccagagatccgtgaaaaactttcagctcactttagaggtatcatcattgaagccgggagtgt |
213 |
Q |
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| T |
45440848 |
cttgactatagagataaaggaaggccaggacttggaatccagagatccgtgaaaaactttcagctcactttagaggtatcatcattgaagccgggagtgt |
45440749 |
T |
|
| Q |
214 |
tttttatgttataataacgcagttagttatgttctctacttagcttatttgtgtttgctatgattaggagaatgggaagcagacaatcctgcagctaggg |
313 |
Q |
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| T |
45440748 |
tttttatgttataataacgcagttagttatgttgtctacttagctgatttgtgtttgctatgattaggagaatgggaagcagacaatcctgcagctaggg |
45440649 |
T |
|
| Q |
314 |
agggtaggaaaatctaattttgttatggactacaggtatcaattcaaaattttcttgttttattgaccttaatgttttttgacgatgcggggtttcatag |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
45440648 |
agggtaggaaaatctaattttgttatggactacaggtatcaattcaaaattttcttgttttattgaccttaatgttttttgaggatgcggggtttcatag |
45440549 |
T |
|
| Q |
414 |
ctagtaccatttcctctgtcaatctgcagatatcctttgactggttaccaggcgttttgcatatgtttggcttccattgatgcaaagctttgttgcatag |
513 |
Q |
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| T |
45440548 |
ctagtaccatttcctctgtcaatctgcagatatcctttgactggttaccaggcgttttgcatatgtttggcttccattgatgcaaagctttgttgcatag |
45440449 |
T |
|
| Q |
514 |
tgtagcggcaaatctctctgttcccaccattggttcaacctctgaactcaagatctcttctgtttcgcccagccccatccagaaagaagtcttggaattt |
613 |
Q |
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| T |
45440448 |
tgtagcggcaaatctctctgttcccaccattggttcaacctctgaactcaagatctcttctgtttcgcccagccccatccagaaagaagtcttggaattt |
45440349 |
T |
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| Q |
614 |
atttgcccaagttagtgaagcttttgtctgagtacatttttcaacagaaaaatgaaaattttggagttgtatttggtgtgtctaatcttcagctaggaag |
713 |
Q |
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| T |
45440348 |
atttgcccaagttagtgaagcttttgtctgagtacatttttcaacagaaaaatgaaaattttggagttgtatttggtgtgtctaatcttcagctaggaag |
45440249 |
T |
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| Q |
714 |
atat |
717 |
Q |
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|||| |
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| T |
45440248 |
atat |
45440245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 534 - 717
Target Start/End: Complemental strand, 45439841 - 45439659
Alignment:
| Q |
534 |
ttcccaccattggttcaacctctgaactcaagatctcttctg-tttcgcccagccccatccagaaagaagtcttgg-aatttatttgcccaagttagtga |
631 |
Q |
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||||||| ||| |||||||||||||||| ||| | |||||| ||||||||| |||||||||||||| ||| | || |||||| ||||||| | ||| |
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| T |
45439841 |
ttcccacaattagttcaacctctgaactaaagttagcttctggtttcgcccaataccatccagaaagaacgctttgcaaattatttacccaagt-attga |
45439743 |
T |
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| Q |
632 |
agcttttgtctgagtacatttttcaacagaaaaatgaaaattttggagttgtatttggtgtgtctaatcttcagctaggaagatat |
717 |
Q |
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| T |
45439742 |
a--ttttgtctgagtacatttttcaaaagaaaaatgaagattttggacttgtatttggtgtgtttaaccttcagctaggaagatat |
45439659 |
T |
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