View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3878_high_21 (Length: 262)
Name: NF3878_high_21
Description: NF3878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3878_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 12 - 252
Target Start/End: Complemental strand, 1965482 - 1965242
Alignment:
| Q |
12 |
caaaccaggttcgatcaagtcaccgtctcaagctcaaggccgaaaagaaccatgagcttatacttctagaaggcgatctcggtcattatttggatttcga |
111 |
Q |
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| T |
1965482 |
caaatcaggttcgatcaagtcaccatctcaagctcaaggccgaaaagaaccatgagcttatacttctagaagacgatctcggtcattatttggatttcga |
1965383 |
T |
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| Q |
112 |
gcaattttcaagtactagtccacaatggacgacccatcaatttaaactaagtaaaacaatatgaaacaaaaaagagaaataatagaactaacttggtcta |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1965382 |
gcaattttcaagtactagtccacaatggacgacccatcaatttaaactaagtaaaacattatgaaacaaaaaagagaaataatagaactaacttggtcta |
1965283 |
T |
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| Q |
212 |
atttttcaaaagagtcggcccttctaggaacccaacctttg |
252 |
Q |
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| T |
1965282 |
atttttcaaaagagtcggcccttctaggaacccaacctttg |
1965242 |
T |
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