View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3878_high_25 (Length: 244)

Name: NF3878_high_25
Description: NF3878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3878_high_25
NF3878_high_25
[»] chr3 (39 HSPs)
chr3 (1-241)||(54468898-54469138)
chr3 (55-232)||(54469111-54469285)
chr3 (1-235)||(54468976-54469210)
chr3 (3-235)||(11227983-11228212)
chr3 (55-234)||(11227957-11228133)
chr3 (3-153)||(11240592-11240742)
chr3 (55-235)||(11228269-11228446)
chr3 (55-235)||(11228425-11228602)
chr3 (55-234)||(11228191-11228367)
chr3 (3-235)||(11228061-11228290)
chr3 (55-235)||(11228503-11228680)
chr3 (56-181)||(54459256-54459378)
chr3 (3-235)||(11228295-11228524)
chr3 (81-235)||(11227905-11228056)
chr3 (27-153)||(11240928-11241054)
chr3 (81-235)||(11241216-11241367)
chr3 (55-181)||(54459477-54459600)
chr3 (40-181)||(54468703-54468841)
chr3 (81-153)||(54459125-54459197)
chr3 (54-235)||(54459176-54459354)
chr3 (54-153)||(11240799-11240898)
chr3 (66-153)||(11241279-11241366)
chr3 (55-110)||(54459555-54459610)
chr3 (3-153)||(11228529-11228679)
chr3 (53-181)||(11240486-11240611)
chr3 (88-153)||(49745127-49745192)
chr3 (66-181)||(54468807-54468919)
chr3 (162-234)||(54459125-54459197)
chr3 (61-234)||(11241118-11241288)
chr3 (56-181)||(54459793-54459915)
chr3 (60-114)||(54459416-54459470)
chr3 (59-101)||(54459952-54459994)
chr3 (3-120)||(11240826-11240943)
chr3 (57-110)||(11241426-11241479)
chr3 (162-235)||(54459818-54459891)
chr3 (56-108)||(11241581-11241633)
chr3 (206-234)||(49745127-49745155)
chr3 (136-234)||(54459480-54459575)
chr3 (54-110)||(54459632-54459688)


Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 54468898 - 54469138
Alignment:
Q  1 tgtttcagcatatggagacaatggtgtagaagttaagggaaagaagaaagtcgttaaagatttcaaaccaagaccaaatgtttcagcttatggagacaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54468898 tgtttcagcatatggagacaatggtgtagaagttaagggaaagaagaaagtcgttaaagatttcaaaccaagaccaaatgtttcagcttatggagacaat 54468997  T
Q  101 gatattgatgttaaggaaaataaaggagccaatacagattttgaaccaagaccaaattacgtttcagcatatggagacaataatattgatgttacagaaa 200  Q
    | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54468998 ggtattgatgttaaggaaaataaaggagccaatacggattttgaaccaagaccaaattacgtttcagcatatggagacaataatattgatgttacagaaa 54469097  T
Q  201 ataaaggagccaataaagattttgaaccaagacccgatgtt 241  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  54469098 ataaaggagccaataaagattttgaaccaagacccaatgtt 54469138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 55 - 232
Target Start/End: Original strand, 54469111 - 54469285
Alignment:
Q  55 taaagatttcaaaccaagaccaaatgtttcagcttatggagacaatgatattgatgttaaggaaaataaaggagccaatacagattttgaaccaagacca 154  Q
    |||||||||  |||||||||| |||||||| ||||||||||| | ||||||||||||||||||||||||||||| || || ||||||||||||||||||     
T  54469111 taaagattttgaaccaagacccaatgtttctgcttatggagatagtgatattgatgttaaggaaaataaaggagtcagtaaagattttgaaccaagaccc 54469210  T
Q  155 aattacgtttcagcatatggagacaataatattgatgttacagaaaataaaggagccaataaagattttgaaccaaga 232  Q
    |   |||||||| |||||||| ||||| |||| ||||||||||||||||||| || |||||||| |||||||||||||    
T  54469211 a---acgtttcaacatatggaaacaatgatatcgatgttacagaaaataaagaagtcaataaagcttttgaaccaaga 54469285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 54468976 - 54469210
Alignment:
Q  1 tgtttcagcatatggagacaatggtgtagaagttaagggaaagaagaaagtcgttaaagatttcaaaccaagaccaaat---gtttcagcttatggagac 97  Q
    ||||||||| ||||||||||||||| | || ||||||| ||| ||   || |  ||  |||||  ||||||||||||||   |||||||| |||||||||    
T  54468976 tgtttcagcttatggagacaatggtattgatgttaaggaaaataaaggagccaatacggattttgaaccaagaccaaattacgtttcagcatatggagac 54469075  T
Q  98 aatgatattgatgttaaggaaaataaaggagccaatacagattttgaaccaagaccaaattacgtttcagcatatggagacaataatattgatgttacag 197  Q
    ||| ||||||||||||  ||||||||||||||||||| |||||||||||||||||| |||   ||||| || |||||||| | | ||||||||||||  |    
T  54469076 aataatattgatgttacagaaaataaaggagccaataaagattttgaaccaagacccaat---gtttctgcttatggagatagtgatattgatgttaagg 54469172  T
Q  198 aaaataaaggagccaataaagattttgaaccaagaccc 235  Q
    |||||||||||| || ||||||||||||||||||||||    
T  54469173 aaaataaaggagtcagtaaagattttgaaccaagaccc 54469210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 235
Target Start/End: Original strand, 11227983 - 11228212
Alignment:
Q  3 tttcagcatatggagacaatggtgtagaagttaagggaaagaagaaagtcgttaaagatttcaaaccaagaccaaatgtttcagcttatggagacaatga 102  Q
    ||||||| |||||||||||||   | || ||||| | |||||||  || || |||||||||  |||||||||| ||  ||||||||||||||||||||||    
T  11227983 tttcagcttatggagacaatgagattgatgttaaagaaaagaagggagccgctaaagattttgaaccaagacccaacatttcagcttatggagacaatga 11228082  T
Q  103 tattgatgttaaggaaaataaaggagccaatacagattttgaaccaagaccaaattacgtttcagcatatggagacaataatattgatgttacagaaaat 202  Q
    ||||||||| |||||||| || ||||||| || ||||||||||||||||||||   || ||||||| |||||||||||| | || ||||| |  |||||     
T  11228083 tattgatgtcaaggaaaagaagggagccactaaagattttgaaccaagaccaa---acatttcagcttatggagacaatgacatagatgtgaatgaaaag 11228179  T
Q  203 aaaggagccaataaagattttgaaccaagaccc 235  Q
    || |||||   |||||||||||||||| |||||    
T  11228180 aagggagctgctaaagattttgaaccacgaccc 11228212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 55 - 234
Target Start/End: Original strand, 11227957 - 11228133
Alignment:
Q  55 taaagatttcaaaccaagaccaaatgtttcagcttatggagacaatgatattgatgttaaggaaaataaaggagccaatacagattttgaaccaagacca 154  Q
    |||||||||  |||| ||||| ||  |||||||||||||||||||||| ||||||||||| ||||| || ||||||  || ||||||||||||||||||     
T  11227957 taaagattttgaacctagacccaacatttcagcttatggagacaatgagattgatgttaaagaaaagaagggagccgctaaagattttgaaccaagaccc 11228056  T
Q  155 aattacgtttcagcatatggagacaataatattgatgttacagaaaataaaggagccaataaagattttgaaccaagacc 234  Q
    |   || ||||||| |||||||||||| |||||||||| |  ||||| || ||||||| |||||||||||||||||||||    
T  11228057 a---acatttcagcttatggagacaatgatattgatgtcaaggaaaagaagggagccactaaagattttgaaccaagacc 11228133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 3 - 153
Target Start/End: Original strand, 11240592 - 11240742
Alignment:
Q  3 tttcagcatatggagacaatggtgtagaagttaagggaaagaagaaagtcgttaaagatttcaaaccaagaccaaatgtttcagcttatggagacaatga 102  Q
    |||||||||||||||||||||   |||| ||||||| ||||||||||||||| ||||||||| |||||||||| ||| |||||||||| | ||||||||     
T  11240592 tttcagcatatggagacaatgccatagatgttaaggaaaagaagaaagtcgtcaaagatttcgaaccaagacctaatatttcagcttacgaagacaatgt 11240691  T
Q  103 tattgatgttaaggaaaataaaggagccaatacagattttgaaccaagacc 153  Q
      ||||||||||  |||| || |||| || || ||||||||||||||||||    
T  11240692 cgttgatgttaaaaaaaagaagggagtcactaaagattttgaaccaagacc 11240742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 55 - 235
Target Start/End: Original strand, 11228269 - 11228446
Alignment:
Q  55 taaagatttcaaaccaagaccaaatgtttcagcttatggagacaatgatattgatgttaaggaaaataaaggagccaatacagattttgaaccaagacca 154  Q
    |||||||||  ||||| |||| ||  |||||||||||||||||||||| ||||||||||||||||| || ||||||| || ||||||||||||| |||||    
T  11228269 taaagattttgaaccacgacccaacatttcagcttatggagacaatgagattgatgttaaggaaaagaagggagccactaaagattttgaaccacgacca 11228368  T
Q  155 aattacgtttcagcatatggagacaataatattgatgttacagaaaataaaggagccaataaagattttgaaccaagaccc 235  Q
    |   || ||||||| |||||||||||| | || ||||| |  ||||| || |||||   |||||||||||||||| |||||    
T  11228369 a---acatttcagcttatggagacaatgacatagatgtgaatgaaaagaagggagctgctaaagattttgaaccacgaccc 11228446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 55 - 235
Target Start/End: Original strand, 11228425 - 11228602
Alignment:
Q  55 taaagatttcaaaccaagaccaaatgtttcagcttatggagacaatgatattgatgttaaggaaaataaaggagccaatacagattttgaaccaagacca 154  Q
    |||||||||  ||||| |||| ||  |||||||||||||||||||||| || |||||||| ||||| || ||||| | || ||||||||||||| ||||     
T  11228425 taaagattttgaaccacgacccaacatttcagcttatggagacaatgacatagatgttaatgaaaagaagggagctactaaagattttgaaccacgaccc 11228524  T
Q  155 aattacgtttcagcatatggagacaataatattgatgttacagaaaataaaggagccaataaagattttgaaccaagaccc 235  Q
    |   || ||||||| |||||||||||| | ||||||||||  ||||| || ||||||| |||||||||||||||| |||||    
T  11228525 a---acatttcagcttatggagacaatgagattgatgttaaggaaaagaagggagccactaaagattttgaaccacgaccc 11228602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 55 - 234
Target Start/End: Original strand, 11228191 - 11228367
Alignment:
Q  55 taaagatttcaaaccaagaccaaatgtttcagcttatggagacaatgatattgatgttaaggaaaataaaggagccaatacagattttgaaccaagacca 154  Q
    |||||||||  ||||| |||| ||  |||||||||||||||||||||| || |||||||| ||||| || ||||| | || ||||||||||||| ||||     
T  11228191 taaagattttgaaccacgacccaacatttcagcttatggagacaatgacatagatgttaatgaaaagaagggagctactaaagattttgaaccacgaccc 11228290  T
Q  155 aattacgtttcagcatatggagacaataatattgatgttacagaaaataaaggagccaataaagattttgaaccaagacc 234  Q
    |   || ||||||| |||||||||||| | ||||||||||  ||||| || ||||||| |||||||||||||||| ||||    
T  11228291 a---acatttcagcttatggagacaatgagattgatgttaaggaaaagaagggagccactaaagattttgaaccacgacc 11228367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 235
Target Start/End: Original strand, 11228061 - 11228290
Alignment:
Q  3 tttcagcatatggagacaatggtgtagaagttaagggaaagaagaaagtcgttaaagatttcaaaccaagaccaaatgtttcagcttatggagacaatga 102  Q
    ||||||| ||||||||||||| | | || || |||| |||||||  || |  |||||||||  |||||||||||||  ||||||||||||||||||||||    
T  11228061 tttcagcttatggagacaatgatattgatgtcaaggaaaagaagggagccactaaagattttgaaccaagaccaaacatttcagcttatggagacaatga 11228160  T
Q  103 tattgatgttaaggaaaataaaggagccaatacagattttgaaccaagaccaaattacgtttcagcatatggagacaataatattgatgttacagaaaat 202  Q
     || ||||| || ||||| || |||||   || ||||||||||||| |||| ||   | ||||||| |||||||||||| | || |||||||  |||||     
T  11228161 catagatgtgaatgaaaagaagggagctgctaaagattttgaaccacgacccaa---catttcagcttatggagacaatgacatagatgttaatgaaaag 11228257  T
Q  203 aaaggagccaataaagattttgaaccaagaccc 235  Q
    || ||||| | |||||||||||||||| |||||    
T  11228258 aagggagctactaaagattttgaaccacgaccc 11228290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 55 - 235
Target Start/End: Original strand, 11228503 - 11228680
Alignment:
Q  55 taaagatttcaaaccaagaccaaatgtttcagcttatggagacaatgatattgatgttaaggaaaataaaggagccaatacagattttgaaccaagacca 154  Q
    |||||||||  ||||| |||| ||  |||||||||||||||||||||| ||||||||||||||||| || ||||||| || ||||||||||||| ||||     
T  11228503 taaagattttgaaccacgacccaacatttcagcttatggagacaatgagattgatgttaaggaaaagaagggagccactaaagattttgaaccacgaccc 11228602  T
Q  155 aattacgtttcagcatatggagacaataatattgatgttacagaaaataaaggagccaataaagattttgaaccaagaccc 235  Q
    |   || |||| || |||||||| ||  | ||||||||||  ||||| || ||||||| ||||  ||||||||||||||||    
T  11228603 a---acatttcggcttatggagataacgagattgatgttaaggaaaacaatggagccactaaaatttttgaaccaagaccc 11228680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 56 - 181
Target Start/End: Original strand, 54459256 - 54459378
Alignment:
Q  56 aaagatttcaaaccaagaccaaatgtttcagcttatggagacaatgatattgatgttaaggaaaataaaggagccaatacagattttgaaccaagaccaa 155  Q
    ||||||||  |||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||| |||||||  |  |||||||| |||||||| |    
T  54459256 aaagattttgaaccaagacccaatatttcagcttatggagacaatgacattgatgttaaggaaaataagggagccaccaacgattttgagccaagaccca 54459355  T
Q  156 attacgtttcagcatatggagacaat 181  Q
       || ||||||| ||||||||||||    
T  54459356 ---acatttcagcttatggagacaat 54459378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 235
Target Start/End: Original strand, 11228295 - 11228524
Alignment:
Q  3 tttcagcatatggagacaatggtgtagaagttaagggaaagaagaaagtcgttaaagatttcaaaccaagaccaaatgtttcagcttatggagacaatga 102  Q
    ||||||| |||||||||||||   | || ||||||| |||||||  || |  |||||||||  ||||| |||||||  ||||||||||||||||||||||    
T  11228295 tttcagcttatggagacaatgagattgatgttaaggaaaagaagggagccactaaagattttgaaccacgaccaaacatttcagcttatggagacaatga 11228394  T
Q  103 tattgatgttaaggaaaataaaggagccaatacagattttgaaccaagaccaaattacgtttcagcatatggagacaataatattgatgttacagaaaat 202  Q
     || ||||| || ||||| || |||||   || ||||||||||||| |||| |   || ||||||| |||||||||||| | || |||||||  |||||     
T  11228395 catagatgtgaatgaaaagaagggagctgctaaagattttgaaccacgaccca---acatttcagcttatggagacaatgacatagatgttaatgaaaag 11228491  T
Q  203 aaaggagccaataaagattttgaaccaagaccc 235  Q
    || ||||| | |||||||||||||||| |||||    
T  11228492 aagggagctactaaagattttgaaccacgaccc 11228524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 81 - 235
Target Start/End: Original strand, 11227905 - 11228056
Alignment:
Q  81 tttcagcttatggagacaatgatattgatgttaaggaaaataaaggagccaatacagattttgaaccaagaccaaattacgtttcagcatatggagacaa 180  Q
    |||||||||| ||||| ||||| ||| ||| || |||||| || |||| || || |||||||||||| ||||| |   || ||||||| |||||||||||    
T  11227905 tttcagcttacggagataatgacattaatgctacggaaaagaatggagacactaaagattttgaacctagaccca---acatttcagcttatggagacaa 11228001  T
Q  181 taatattgatgttacagaaaataaaggagccaataaagattttgaaccaagaccc 235  Q
    | | |||||||||| |||||| || ||||||  ||||||||||||||||||||||    
T  11228002 tgagattgatgttaaagaaaagaagggagccgctaaagattttgaaccaagaccc 11228056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 153
Target Start/End: Original strand, 11240928 - 11241054
Alignment:
Q  27 tagaagttaagggaaagaagaaagtcgttaaagatttcaaaccaagaccaaatgtttcagcttatggagacaatgatattgatgttaaggaaaataaagg 126  Q
    |||| ||||||| ||||||||||| ||| ||||||||| |||||||||| | | |||||||||  ||||||||||  |||||||||||| |||| || ||    
T  11240928 tagatgttaaggaaaagaagaaagccgtcaaagatttcgaaccaagacctagtatttcagcttgcggagacaatgtcattgatgttaagaaaaagaaggg 11241027  T
Q  127 agccaatacagattttgaaccaagacc 153  Q
    || || |  ||||||||||||||||||    
T  11241028 agtcactgaagattttgaaccaagacc 11241054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 81 - 235
Target Start/End: Original strand, 11241216 - 11241367
Alignment:
Q  81 tttcagcttatggagacaatgatattgatgttaaggaaaataaaggagccaatacagattttgaaccaagaccaaattacgtttcagcatatggagacaa 180  Q
    |||| ||||||||||||||||  ||||||| ||||||||| |  ||||||| ||  |||||||||||||||||||   || ||||||| |||||||||||    
T  11241216 tttcggcttatggagacaatgccattgatgctaaggaaaagaggggagccactaatgattttgaaccaagaccaa---acatttcagcttatggagacaa 11241312  T
Q  181 taatattgatgttacagaaaataaaggagccaataaagattttgaaccaagaccc 235  Q
    | | ||||||||||   ||||  | |||||||  |||||||| ||||||||||||    
T  11241313 tgacattgatgttaataaaaaggagggagccatcaaagatttcgaaccaagaccc 11241367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 55 - 181
Target Start/End: Original strand, 54459477 - 54459600
Alignment:
Q  55 taaagatttcaaaccaagaccaaatgtttcagcttatggagacaatgatattgatgttaaggaaaataaaggagccaatacagattttgaaccaagacca 154  Q
    |||||||||  |||||||||| ||  ||||||||| |||||||||||| ||||||||||| ||||| || ||||  | || |||||| ||||||||||||    
T  54459477 taaagattttgaaccaagacccaacatttcagcttttggagacaatgacattgatgttaatgaaaagaagggagatactaaagatttcgaaccaagacca 54459576  T
Q  155 aattacgtttcagcatatggagacaat 181  Q
    |||    ||||||| ||||||||||||    
T  54459577 aat---atttcagcttatggagacaat 54459600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 181
Target Start/End: Original strand, 54468703 - 54468841
Alignment:
Q  40 aaagaagaaagtcgttaaagatttcaaaccaagaccaaatgtttcagcttatggagacaatgatattgatgttaaggaaaataaaggagccaatacagat 139  Q
    |||||||| |||||| ||||| ||  |||||||||| |||||||||||||||||||  ||||| ||||||| |||||| || || ||||  | |   |||    
T  54468703 aaagaagagagtcgtcaaagactttgaaccaagacctaatgtttcagcttatggagcaaatgaaattgatgctaaggataagaagggagttattgatgat 54468802  T
Q  140 tttgaaccaagaccaaattacgtttcagcatatggagacaat 181  Q
    |||||||||||||| |||   |||||||| ||||||||||||    
T  54468803 tttgaaccaagacccaat---gtttcagcttatggagacaat 54468841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 153
Target Start/End: Original strand, 54459125 - 54459197
Alignment:
Q  81 tttcagcttatggagacaatgatattgatgttaaggaaaataaaggagccaatacagattttgaaccaagacc 153  Q
    |||||||||||||||||||||| |||||||| || ||||| || ||||||| || |||||||||||| |||||    
T  54459125 tttcagcttatggagacaatgacattgatgtaaaagaaaagaatggagccattaaagattttgaacctagacc 54459197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 235
Target Start/End: Original strand, 54459176 - 54459354
Alignment:
Q  54 ttaaagatttcaaaccaagaccaaatgtttcagcttatggagacaatgatattgatgttaaggaaaataaaggagccaat-acagattttgaaccaagac 152  Q
    ||||||||||  |||| ||||| ||| |||||||||||||||| ||||  ||||||| | | ||||| || | | ||| | | |||||||||||||||||    
T  54459176 ttaaagattttgaacctagacctaatatttcagcttatggagaaaatgtcattgatgctgatgaaaagaa-gaaaccagtcaaagattttgaaccaagac 54459274  T
Q  153 caaattacgtttcagcatatggagacaataatattgatgttacagaaaataaaggagccaataaagattttgaaccaagaccc 235  Q
    | |||    ||||||| |||||||||||| | ||||||||||  |||||||| |||||||  || |||||||| |||||||||    
T  54459275 ccaata---tttcagcttatggagacaatgacattgatgttaaggaaaataagggagccaccaacgattttgagccaagaccc 54459354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 153
Target Start/End: Original strand, 11240799 - 11240898
Alignment:
Q  54 ttaaagatttcaaaccaagaccaaatgtttcagcttatggagacaatgatattgatgttaaggaaaataaaggagccaatacagattttgaaccaagacc 153  Q
    |||| |||||| |||||||||| ||  |||||||||||||||| |||||||| |||||||| ||||| || | ||||  ||  |||||||||||||||||    
T  11240799 ttaatgatttcgaaccaagacccaacatttcagcttatggagaaaatgatatcgatgttaatgaaaagaaggcagccgctaaggattttgaaccaagacc 11240898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 153
Target Start/End: Original strand, 11241279 - 11241366
Alignment:
Q  66 aaccaagaccaaatgtttcagcttatggagacaatgatattgatgttaaggaaaataaaggagccaatacagattttgaaccaagacc 153  Q
    |||||||||||||  |||||||||||||||||||||| |||||||||||  ||||  | |||||||  | |||||| |||||||||||    
T  11241279 aaccaagaccaaacatttcagcttatggagacaatgacattgatgttaataaaaaggagggagccatcaaagatttcgaaccaagacc 11241366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 54459555 - 54459610
Alignment:
Q  55 taaagatttcaaaccaagaccaaatgtttcagcttatggagacaatgatattgatg 110  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||  |||||||    
T  54459555 taaagatttcgaaccaagaccaaatatttcagcttatggagacaatgccattgatg 54459610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 153
Target Start/End: Original strand, 11228529 - 11228679
Alignment:
Q  3 tttcagcatatggagacaatggtgtagaagttaagggaaagaagaaagtcgttaaagatttcaaaccaagaccaaatgtttcagcttatggagacaatga 102  Q
    ||||||| |||||||||||||   | || ||||||| |||||||  || |  |||||||||  ||||| |||| ||  |||| ||||||||||| || ||    
T  11228529 tttcagcttatggagacaatgagattgatgttaaggaaaagaagggagccactaaagattttgaaccacgacccaacatttcggcttatggagataacga 11228628  T
Q  103 tattgatgttaaggaaaataaaggagccaatacagattttgaaccaagacc 153  Q
     ||||||||||||||||| || ||||||| || |  |||||||||||||||    
T  11228629 gattgatgttaaggaaaacaatggagccactaaaatttttgaaccaagacc 11228679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 181
Target Start/End: Original strand, 11240486 - 11240611
Alignment:
Q  53 gttaaagatttcaaaccaagaccaaatgtttcagcttatggagacaatgatattgatgttaaggaaaataaaggagccaatacagattttgaaccaagac 152  Q
    |||||||||||  |||||||||| ||  |||||||||||||||||||||| |||||   ||||||||| |||||  ||  || ||||||||| ||| |||    
T  11240486 gttaaagattttgaaccaagacccaacatttcagcttatggagacaatgacattgaaaataaggaaaagaaaggtaccgttaaagattttgagccacgac 11240585  T
Q  153 caaattacgtttcagcatatggagacaat 181  Q
    | |   || ||||||||||||||||||||    
T  11240586 cca---acatttcagcatatggagacaat 11240611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 153
Target Start/End: Complemental strand, 49745192 - 49745127
Alignment:
Q  88 ttatggagacaatgatattgatgttaaggaaaataaaggagccaatacagattttgaaccaagacc 153  Q
    ||||||||||||||| |||||||  |||| ||| || |||||||||| ||||||||||||||||||    
T  49745192 ttatggagacaatgagattgatgcaaaggcaaacaagggagccaataaagattttgaaccaagacc 49745127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 181
Target Start/End: Original strand, 54468807 - 54468919
Alignment:
Q  66 aaccaagaccaaatgtttcagcttatggagacaatgatattgatgttaaggaaaataaaggagccaatacagattttgaaccaagaccaaattacgtttc 165  Q
    |||||||||| ||||||||||||||||||||||||||  |||| | |||| |||| || |||  || |  ||||||||||||||||   |||   |||||    
T  54468807 aaccaagacccaatgtttcagcttatggagacaatgacgttgaagctaagaaaaagaagggaatcactgaagattttgaaccaagatacaat---gtttc 54468903  T
Q  166 agcatatggagacaat 181  Q
    ||||||||||||||||    
T  54468904 agcatatggagacaat 54468919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 54459125 - 54459197
Alignment:
Q  162 tttcagcatatggagacaataatattgatgttacagaaaataaaggagccaataaagattttgaaccaagacc 234  Q
    ||||||| |||||||||||| | |||||||| | |||||| || ||||||| ||||||||||||||| |||||    
T  54459125 tttcagcttatggagacaatgacattgatgtaaaagaaaagaatggagccattaaagattttgaacctagacc 54459197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 234
Target Start/End: Original strand, 11241118 - 11241288
Alignment:
Q  61 tttcaaaccaagaccaaatgtttcagcttatggagacaatgatattgatgttaaggaaaataaaggagccaatacagattttgaaccaagaccaaattac 160  Q
    ||||||||||||||||||  |||||||||||||| | ||||| || |||||| | ||||| || | ||||  ||  |||||||||||| |||| |   ||    
T  11241118 tttcaaaccaagaccaaacatttcagcttatggaaagaatgacatcgatgttcatgaaaagaaggcagccggtaaggattttgaaccacgaccca---ac 11241214  T
Q  161 gtttcagcatatggagacaataatattgatgttacagaaaataaaggagccaataaagattttgaaccaagacc 234  Q
     |||| || ||||||||||||   ||||||| ||  ||||| |  ||||||| ||| |||||||||||||||||    
T  11241215 atttcggcttatggagacaatgccattgatgctaaggaaaagaggggagccactaatgattttgaaccaagacc 11241288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 181
Target Start/End: Original strand, 54459793 - 54459915
Alignment:
Q  56 aaagatttcaaaccaagaccaaatgtttcagcttatggagacaatgatattgatgttaaggaaaataaaggagccaatacagattttgaaccaagaccaa 155  Q
    ||||||||  |||||||| | ||  |||||||||||||||||||||| ||||||||||| ||||| || |||| ||  |  |||||||| |||||||| |    
T  54459793 aaagattttgaaccaagaaccaacatttcagcttatggagacaatgacattgatgttaaagaaaagaagggagtcaccaacgattttgagccaagaccca 54459892  T
Q  156 attacgtttcagcatatggagacaat 181  Q
       || ||||||| ||||||||||||    
T  54459893 ---acatttcagcttatggagacaat 54459915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 114
Target Start/End: Original strand, 54459416 - 54459470
Alignment:
Q  60 atttcaaaccaagaccaaatgtttcagcttatggagacaatgatattgatgttaa 114  Q
    ||||| |||||||||||||  |||||||||||||||| ||||| |||||||||||    
T  54459416 atttccaaccaagaccaaacatttcagcttatggagaaaatgacattgatgttaa 54459470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 101
Target Start/End: Original strand, 54459952 - 54459994
Alignment:
Q  59 gatttcaaaccaagaccaaatgtttcagcttatggagacaatg 101  Q
    |||||| |||||||||||| | |||||||||||||||||||||    
T  54459952 gatttccaaccaagaccaactatttcagcttatggagacaatg 54459994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 120
Target Start/End: Original strand, 11240826 - 11240943
Alignment:
Q  3 tttcagcatatggagacaatggtgtagaagttaagggaaagaagaaagtcgttaaagatttcaaaccaagaccaaatgtttcagcttatggagacaatga 102  Q
    ||||||| |||||||| |||| | | || ||||| | |||||||  || || ||| |||||  |||||||||| ||| |||| |||||||||||| |||     
T  11240826 tttcagcttatggagaaaatgatatcgatgttaatgaaaagaaggcagccgctaaggattttgaaccaagacccaatatttcggcttatggagacgatgt 11240925  T
Q  103 tattgatgttaaggaaaa 120  Q
     || ||||||||||||||    
T  11240926 catagatgttaaggaaaa 11240943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 11241426 - 11241479
Alignment:
Q  57 aagatttcaaaccaagaccaaatgtttcagcttatggagacaatgatattgatg 110  Q
    |||||||| |||||||||| ||  |||||||||| ||||||||||| |||||||    
T  11241426 aagatttcgaaccaagacccaacatttcagcttacggagacaatgacattgatg 11241479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 54459818 - 54459891
Alignment:
Q  162 tttcagcatatggagacaataatattgatgttacagaaaataaaggagccaataaagattttgaaccaagaccc 235  Q
    ||||||| |||||||||||| | |||||||||| |||||| || |||| ||  || |||||||| |||||||||    
T  54459818 tttcagcttatggagacaatgacattgatgttaaagaaaagaagggagtcaccaacgattttgagccaagaccc 54459891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 11241581 - 11241633
Alignment:
Q  56 aaagatttcaaaccaagaccaaatgtttcagcttatggagacaatgatattga 108  Q
    ||||||||  ||||||| |||||| |||||||||||||  |||||||||||||    
T  11241581 aaagattttgaaccaaggccaaatatttcagcttatggcaacaatgatattga 11241633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 234
Target Start/End: Complemental strand, 49745155 - 49745127
Alignment:
Q  206 ggagccaataaagattttgaaccaagacc 234  Q
    |||||||||||||||||||||||||||||    
T  49745155 ggagccaataaagattttgaaccaagacc 49745127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 234
Target Start/End: Original strand, 54459480 - 54459575
Alignment:
Q  136 agattttgaaccaagaccaaattacgtttcagcatatggagacaataatattgatgttacagaaaataaaggagccaataaagattttgaaccaagacc 234  Q
    |||||||||||||||||| ||   | ||||||| | |||||||||| | ||||||||||  ||||| || ||||  | ||||||||| |||||||||||    
T  54459480 agattttgaaccaagacccaa---catttcagcttttggagacaatgacattgatgttaatgaaaagaagggagatactaaagatttcgaaccaagacc 54459575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 54459632 - 54459688
Alignment:
Q  54 ttaaagatttcaaaccaagaccaaatgtttcagcttatggagacaatgatattgatg 110  Q
    |||||||||| ||||||| ||||||  |||| ||||||||||||||||  |||||||    
T  54459632 ttaaagattttaaaccaaaaccaaacatttcggcttatggagacaatgtcattgatg 54459688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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