View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3878_high_27 (Length: 237)
Name: NF3878_high_27
Description: NF3878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3878_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 28938000 - 28937781
Alignment:
| Q |
1 |
ctaaatatgcattttatgtaacagggaattgcaagaagacttgtgaaagcagcacttagagaagcagcaaggaaaagagagatgagactagcagaccttc |
100 |
Q |
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| T |
28938000 |
ctaaatatgcattttatgtaacagggaattgcaagaagacttgtgaaagcagcacttagagaagcagcaaggaaaagagagatgagactagcagaccttc |
28937901 |
T |
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| Q |
101 |
aaaagattgaacaaggaacaaggagacacttccatgatgatataactgtgattgttgtgtttcttaatcacaaactgattgataacagctctctttgggg |
200 |
Q |
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| T |
28937900 |
aaaagattgaacaaggaacaaggagacacttccatgatgatataactgtgattgttgtgtttcttaatcacaaactgattgataacagctctctttgggg |
28937801 |
T |
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| Q |
201 |
ttcttctctttcaatcaaag |
220 |
Q |
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|||||||||||||||||||| |
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| T |
28937800 |
ttcttctctttcaatcaaag |
28937781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 51135945 - 51135985
Alignment:
| Q |
125 |
gacacttccatgatgatataactgtgattgttgtgtttctt |
165 |
Q |
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| T |
51135945 |
gacatttccatgatgatatcactgtgattgttgtgtttctt |
51135985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 40325622 - 40325425
Alignment:
| Q |
20 |
aacagggaattgcaagaagacttgtgaaagcagcacttagagaagcagcaaggaaaagagagatgagactagcagaccttcaaaagattgaacaaggaac |
119 |
Q |
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| T |
40325622 |
aacagggaatagctaggaggcttgtgaaagcagcacttaaagaagcagctaagaagcgagaaataagattatcagacctccaaaagatcgaacaaggagt |
40325523 |
T |
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| Q |
120 |
aaggagacacttccatgatgatataactgtgattgttgtgtttcttaatcacaaactgattgataacagctctctttggggttcttctctttcaatca |
217 |
Q |
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||||||||||||||||||||||| || || ||||| || | ||| ||| |||||||||||||| |||||||| ||| ||||| |||||||||||| |
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| T |
40325522 |
gaggagacacttccatgatgatattacagtaattgtagtatatctaaattcaaaactgattgataatagctctctatggagttctcctctttcaatca |
40325425 |
T |
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