View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3878_high_28 (Length: 235)

Name: NF3878_high_28
Description: NF3878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3878_high_28
NF3878_high_28
[»] chr1 (2 HSPs)
chr1 (76-153)||(36965716-36965793)
chr1 (1-64)||(36965989-36966052)
[»] chr4 (1 HSPs)
chr4 (97-140)||(579716-579759)


Alignment Details
Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 76 - 153
Target Start/End: Complemental strand, 36965793 - 36965716
Alignment:
Q  76 ataaatttgataaacgacatgagaaaatccttaagattgttgtaaaatcaagtataagaatatctaagcaaatgtacc 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36965793 ataaatttgataaacgacatgagaaaatccttaagattgttgtaaaatcaggtataagaatatctaagcaaatgtacc 36965716  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 36966052 - 36965989
Alignment:
Q  1 tgagtcataactcactcaccaacacacaaatacaacaaaccgaaatagccatatcaaaagagca 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36966052 tgagtcataactcactcaccaacacacaaatacaacaaaccgaaatagccatatcaaaagagca 36965989  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 140
Target Start/End: Original strand, 579716 - 579759
Alignment:
Q  97 agaaaatccttaagattgttgtaaaatcaagtataagaatatct 140  Q
    ||||||||||||||||||||||||||| | | ||||||||||||    
T  579716 agaaaatccttaagattgttgtaaaattagggataagaatatct 579759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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