View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3878_high_3 (Length: 595)

Name: NF3878_high_3
Description: NF3878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3878_high_3
NF3878_high_3
[»] chr1 (3 HSPs)
chr1 (135-576)||(26406116-26406556)
chr1 (15-140)||(26411346-26411472)
chr1 (480-531)||(45022934-45022985)
[»] chr7 (3 HSPs)
chr7 (499-531)||(10855298-10855330)
chr7 (480-531)||(8185910-8185961)
chr7 (499-531)||(10853889-10853921)
[»] scaffold0475 (1 HSPs)
scaffold0475 (480-531)||(1522-1573)
[»] chr8 (1 HSPs)
chr8 (478-531)||(30638415-30638468)
[»] chr5 (1 HSPs)
chr5 (480-529)||(20173042-20173091)
[»] scaffold0035 (1 HSPs)
scaffold0035 (489-529)||(57124-57164)
[»] chr4 (1 HSPs)
chr4 (489-529)||(14706207-14706247)
[»] chr3 (4 HSPs)
chr3 (489-529)||(16320383-16320423)
chr3 (489-529)||(18512459-18512499)
chr3 (489-529)||(22017169-22017209)
chr3 (489-529)||(22021657-22021697)


Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 135 - 576
Target Start/End: Complemental strand, 26406556 - 26406116
Alignment:
Q  135 tcttcttatatttctttttccttgttagtggcttcgttattcgccaatcttgacaaatgatcaggaactaaattttttgttccttttttgtctttgatct 234  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26406556 tcttcttatatttctttttctttgttagtggcttcgttattcgccaatcttgacaaatgatcaggaactaaattctttgttccttttttgtctttgatct 26406457  T
Q  235 ccacgtcaaattcttgtaatagcagcatctatttgatcggtcttggcttggagtcaggtttattcaattaatggctgcatgcatggtcagtataaataat 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26406456 ccacgtcaaattcttgtaatagcagcatctatttgatcggtcttggcttggagtcaggtttattcaattaatggctgcatgcatggtcagtataaataat 26406357  T
Q  335 aatttttgtacctatcaaataagacctaaatttttctaatgtgaatactatggctaacaattctttttctgtggtagtgtaattaatttgtgtctcattt 434  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26406356 aatttttgtacctgtcaaataagacctaaatttttctaatgtgaatactatggctaacaattctttttctgtggtagtgtaattaatttgtatctcattt 26406257  T
Q  435 aagactttgctagcttagtgaatttcatgannnnnnnnncttccttttctttgtcctagtactgcaccgacaacataatcactagcatcacacattatcg 534  Q
    |||||||||||||||||||||||| |||||          | ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  26406256 aagactttgctagcttagtgaattccatgattttttttt-tcccttttccttgtcctagtactgcatcgacagcataatcactagcatcacacattatcg 26406158  T
Q  535 gtgcaattactagttgttttttaagattttcaaaggcttcta 576  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  26406157 gtgcaattactagttgttttttaagattttcaaatgcttcta 26406116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 15 - 140
Target Start/End: Complemental strand, 26411472 - 26411346
Alignment:
Q  15 gaggaatttatgtctttgttcccaattgtaaacttctggaatctcacctgctgctttgaagtttgtcatatcagtaaaccatggtctttctctaat-gcg 113  Q
    ||||||||||||||||||||||| ||||||| ||| |||||||||||||||| ||||| |||||||||| |||| ||| |||||| ||| ||| || | |    
T  26411472 gaggaatttatgtctttgttcccgattgtaatcttttggaatctcacctgctactttgtagtttgtcatgtcagcaaatcatggtgtttttctcatggtg 26411373  T
Q  114 aacaacttttcatctggaaattcttct 140  Q
    ||||| |||||||||||||||||||||    
T  26411372 aacaatttttcatctggaaattcttct 26411346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 480 - 531
Target Start/End: Original strand, 45022934 - 45022985
Alignment:
Q  480 tttctttgtcctagtactgcaccgacaacataatcactagcatcacacatta 531  Q
    |||| ||| |||||||| ||||| ||||||||||||||||||||||||||||    
T  45022934 tttcgttgacctagtacggcaccaacaacataatcactagcatcacacatta 45022985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 499 - 531
Target Start/End: Complemental strand, 10855330 - 10855298
Alignment:
Q  499 caccgacaacataatcactagcatcacacatta 531  Q
    |||||||||||||||||||||||||||||||||    
T  10855330 caccgacaacataatcactagcatcacacatta 10855298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 480 - 531
Target Start/End: Complemental strand, 8185961 - 8185910
Alignment:
Q  480 tttctttgtcctagtactgcaccgacaacataatcactagcatcacacatta 531  Q
    |||| ||| |||||||| ||||| ||| ||||||||||||||||||||||||    
T  8185961 tttcgttgacctagtacggcaccaacagcataatcactagcatcacacatta 8185910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 499 - 531
Target Start/End: Original strand, 10853889 - 10853921
Alignment:
Q  499 caccgacaacataatcactagcatcacacatta 531  Q
    |||| ||||||||||||||||||||||||||||    
T  10853889 caccaacaacataatcactagcatcacacatta 10853921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 480 - 531
Target Start/End: Complemental strand, 1573 - 1522
Alignment:
Q  480 tttctttgtcctagtactgcaccgacaacataatcactagcatcacacatta 531  Q
    |||| ||| |||||||| ||||| ||| ||||||||||||||||||||||||    
T  1573 tttcgttgacctagtacggcaccaacagcataatcactagcatcacacatta 1522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 531
Target Start/End: Original strand, 30638415 - 30638468
Alignment:
Q  478 cttttctttgtcctagtactgcaccgacaacataatcactagcatcacacatta 531  Q
    ||||| |||||||||||||| || |||||||||||||||||  || ||||||||    
T  30638415 cttttatttgtcctagtacttcatcgacaacataatcactaatatgacacatta 30638468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 529
Target Start/End: Complemental strand, 20173091 - 20173042
Alignment:
Q  480 tttctttgtcctagtactgcaccgacaacataatcactagcatcacacat 529  Q
    |||||||| ||||| || ||||| || |||||||||||||||||||||||    
T  20173091 tttctttggcctagcacagcacccaccacataatcactagcatcacacat 20173042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 489 - 529
Target Start/End: Complemental strand, 57164 - 57124
Alignment:
Q  489 cctagtactgcaccgacaacataatcactagcatcacacat 529  Q
    ||||| |||||||| |||||||||||||| |||||||||||    
T  57164 cctaggactgcaccaacaacataatcacttgcatcacacat 57124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 489 - 529
Target Start/End: Complemental strand, 14706247 - 14706207
Alignment:
Q  489 cctagtactgcaccgacaacataatcactagcatcacacat 529  Q
    ||||| |||||||| |||||||||||||| |||||||||||    
T  14706247 cctaggactgcaccaacaacataatcacttgcatcacacat 14706207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 489 - 529
Target Start/End: Original strand, 16320383 - 16320423
Alignment:
Q  489 cctagtactgcaccgacaacataatcactagcatcacacat 529  Q
    ||||| |||||||| |||||||||||||| |||||||||||    
T  16320383 cctaggactgcaccaacaacataatcacttgcatcacacat 16320423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 489 - 529
Target Start/End: Original strand, 18512459 - 18512499
Alignment:
Q  489 cctagtactgcaccgacaacataatcactagcatcacacat 529  Q
    ||||| |||||||| |||||||||||||| |||||||||||    
T  18512459 cctaggactgcaccaacaacataatcacttgcatcacacat 18512499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 489 - 529
Target Start/End: Complemental strand, 22017209 - 22017169
Alignment:
Q  489 cctagtactgcaccgacaacataatcactagcatcacacat 529  Q
    ||||| |||||||| |||||||||||||| |||||||||||    
T  22017209 cctaggactgcaccaacaacataatcacttgcatcacacat 22017169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 489 - 529
Target Start/End: Complemental strand, 22021697 - 22021657
Alignment:
Q  489 cctagtactgcaccgacaacataatcactagcatcacacat 529  Q
    ||||| |||||||| |||||||||||||| |||||||||||    
T  22021697 cctaggactgcaccaacaacataatcacttgcatcacacat 22021657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University