View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3878_high_31 (Length: 219)
Name: NF3878_high_31
Description: NF3878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3878_high_31 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 12 - 198
Target Start/End: Complemental strand, 33340766 - 33340580
Alignment:
| Q |
12 |
gagcacagaggaatacgaggtgaaggaatgtacaacagaagtttctgttaaggcccctgacgtatctaacatcagaaaaagtgaggagaagttaacacca |
111 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33340766 |
gagcacaaaggaatacgaggtgaaggaatgtacaacagaagtttctgttaaggcccccgacgtatctaacatcagaaaaagtgaggagaagttaacacca |
33340667 |
T |
|
| Q |
112 |
gattttgagggtgttctcaatgcgaaaagttcgaaaccgcacaaaacaaggggtaatcacaagccacgagatactgtgaagcctaca |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33340666 |
gattttgagggtgttctcaatgcgaaaagttcgaaaccgcacaaaacaaggggtaatcacaagccacgagatactgtgaagcctaca |
33340580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University