View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3878_high_4 (Length: 531)
Name: NF3878_high_4
Description: NF3878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3878_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 9 - 518
Target Start/End: Complemental strand, 4007717 - 4007224
Alignment:
| Q |
9 |
agcagagaatcagacaaggtttaaaattaaggttacagcaaggacagatacgaatgtaaagcttagagaaagaccagaggtggagttaaaagggtttgac |
108 |
Q |
| |
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|||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4007717 |
agcaaagaatcatacaaggtttaaaatcaaggttacagcaaggacagatacgaatgtaaagcttagagaaagaccagaggtggagttaaaagggtttggc |
4007618 |
T |
|
| Q |
109 |
ataagccccataagcaactccacatatcataatctcattcaacaaatggaattgtttgattatattaacaaatggaataggactgtgcttagtatcatcc |
208 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4007617 |
ataagccccataagcaactcaacatatcataatctcattcaaaaaatggaattgtttgattatatgaacaaatggaataggactgtgcttagtatcatcc |
4007518 |
T |
|
| Q |
209 |
tatgtatttccttcctacagttgaagatgaagaatttgatttagacacaactctagtatgatgcaagtagacacagttaacagttgagttaccaacatta |
308 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4007517 |
tatgtatttccctcctacagttgaagatgaagaatttgatcta----------------gatgcaagtagacacagttaacagttgagttaccaacgtta |
4007434 |
T |
|
| Q |
309 |
ctttctatcattatagttttaatacttacacctataaagttcttaaaaacacaaccataagcaattcattgacatttaacatactctttttgatactatt |
408 |
Q |
| |
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|||| ||| |||||| |||| || ||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
4007433 |
ctttttataattataattttcattcttacacctattaagttcttaaaaactcaaccataagtaattcattgacatttaacatactcttttcgatactatt |
4007334 |
T |
|
| Q |
409 |
aagtacggaaaggacatctgactggttcattcgttttctagtaaatttaattagtcagtgctttattgaacaatgatctttatttatttatgaattcatc |
508 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4007333 |
aagtacggaaaggacatctgactggttcatttgttttctagtaatattaatcagtcagtgctttattgaacaatgatcattatttatttatgaattcatc |
4007234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 173 - 518
Target Start/End: Complemental strand, 3998588 - 3998241
Alignment:
| Q |
173 |
ttaacaaatggaataggactgtgcttagtatcatcctatgtatttccttcctacagttgaagatgaagaatttgatttagacacaactcta--gtatgat |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
3998588 |
ttaacaaatggaataggactgtgcttagtatcgtcctatgtatttccttcctacagttgaagatgaagaatttgatttagacacaactctatagtatgat |
3998489 |
T |
|
| Q |
271 |
gcaagtagacacagttaacagttgagttaccaacattactttctatcattatagttttaatacttacacctataaagttcttaaaaacacaaccataagc |
370 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||| || |
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| T |
3998488 |
gcaagtagacacagttaacagttgagttaccaacattactttctatcattatagttttaatacttgcacctattaagttcttgaaaacacaaccattagt |
3998389 |
T |
|
| Q |
371 |
aattcattgacatttaacatactctttttgatactattaagtacggaaaggacatctgactggttcattcgttttctagtaaatttaattagtcagtgct |
470 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
3998388 |
aattcattgacatttaacgtactcttttcgatactattaagtacggaaaggacatctgactggttcatttgttttctagtaaatttaatcagtcagtgct |
3998289 |
T |
|
| Q |
471 |
ttattgaacaatgatctttatttatttatgaattcatcttgatggtga |
518 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3998288 |
ttattaaacaatgatctttatttatttatgaattcatcttgatggtga |
3998241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 9 - 160
Target Start/End: Complemental strand, 3998726 - 3998575
Alignment:
| Q |
9 |
agcagagaatcagacaaggtttaaaattaaggttacagcaaggacagatacgaatgtaaagcttagagaaagaccagaggtggagttaaaagggtttgac |
108 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
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| T |
3998726 |
agcaaagaatcatacaaggtttaaaattaaggttacagcaaggacagatacgaatgtaaagcttagagaaagacccgaggtggagttaaaagggtttggc |
3998627 |
T |
|
| Q |
109 |
ataagccccataagcaactccacatatcataatctcattcaacaaatggaat |
160 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
3998626 |
ataagccccataagcaactcaacatatcataatctcatttaacaaatggaat |
3998575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 72 - 258
Target Start/End: Original strand, 3957881 - 3958067
Alignment:
| Q |
72 |
tagagaaagaccagaggtggagttaaaagggtttgacataagccccataagcaactccacatatcataatctcattcaacaaatggaattgtttgattat |
171 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||| || ||||||| | || | | || | || || || ||||||||||||| ||||||||| |
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|
| T |
3957881 |
tagagagagaccagaggtggagttaaaagggtttggcatcagacccataatccccttaagagataaaaacatcgttgaacaaatggaattatttgattat |
3957980 |
T |
|
| Q |
172 |
attaacaaatggaataggactgtgcttagtatcatcctatgtatttccttcctacagttgaagatgaagaatttgatttagacacaa |
258 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||| |||||||||| ||||| | | ||||||||||||| ||||||||||||||| |
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|
| T |
3957981 |
gttaacaaatggagtaggactgtgcttagcatcatcatatgtatttctttcctccggctgaagatgaagaagttgatttagacacaa |
3958067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 24 - 363
Target Start/End: Complemental strand, 4022860 - 4022542
Alignment:
| Q |
24 |
aaggtttaaaattaaggttacagcaaggacagatacgaatgtaaagcttagagaaagaccagaggtggagttaaaagggtttgacataagccccataagc |
123 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||| | ||||| | |||| ||||||||||| || ||||||||||| | || |||||||||| | |
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| T |
4022860 |
aaggtttaaaatcaaggttacggcaaggacagaaatcaatgtcta---tagaatgagaccagaggttgaattaaaagggttaggaatcagccccataaac |
4022764 |
T |
|
| Q |
124 |
aactccacatatcataatctcattcaacaaatgg-aattgtttgattatattaacaaatggaataggactgtgcttagtatcatcctatgtatttccttc |
222 |
Q |
| |
|
|||| |||||| ||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| |||||| || |
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|
| T |
4022763 |
cactcaacatataggaatctcattcaacaaatgggaattgtttgattatgttaaccaatggaataggactgtggttagta------------------tc |
4022682 |
T |
|
| Q |
223 |
ctacagttgaagatgaagaatttgatttagacacaactcta--gtatgatgcaagtagacacagttaacagttgagttaccaacattactttctatcatt |
320 |
Q |
| |
|
| || ||||||||||||| ||||||||| ||||| |||| | ||||| ||||||||||||||||| ||||| |||| || ||||||| ||| ||| |
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|
| T |
4022681 |
caac---tgaagatgaagaagttgatttagtcacaagtctatagattgatgtaagtagacacagttaacggttgatttactaatattacttcttataatt |
4022585 |
T |
|
| Q |
321 |
atagttttaatacttacacctataaagttcttaaaaacacaac |
363 |
Q |
| |
|
||| ||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
4022584 |
ataattttaatacttacacctattaagttctttaaaacacaac |
4022542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 71 - 241
Target Start/End: Complemental strand, 3984740 - 3984567
Alignment:
| Q |
71 |
ttagagaaagaccagaggtggagttaaaagggtttgacataagccccataagcaactccacatatcataatctcattcaacaaatggaattgtttgatta |
170 |
Q |
| |
|
||||||||||| |||||||| || |||| ||||||| ||| ||||| ||||| || | | |||| | ||| || || | |||||||||||||||||| |
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|
| T |
3984740 |
ttagagaaagaacagaggtgaagctaaaggggtttggcatcagccctataagtcacacaatatatgacaatttcgttgagcaaatggaattgtttgatcg |
3984641 |
T |
|
| Q |
171 |
tattaacaaatggaataggactg---tgcttagtatcatcctatgtatttccttcctacagttgaagatgaaga |
241 |
Q |
| |
|
||||||||||||||| ||||||| ||||||| |||||||||||||||||||| || ||| |||||||||||| |
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|
| T |
3984640 |
tattaacaaatggaagaggactgtgctgcttagcatcatcctatgtatttccttactgcagctgaagatgaaga |
3984567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 3815423 - 3815349
Alignment:
| Q |
86 |
aggtggagttaaaagggtttgacataagccccataagcaactccacatatcataatctcattcaacaaatggaat |
160 |
Q |
| |
|
||||| ||||||||||||||| ||| |||||||||| | | || |||||||| || ||||||||||||||||||| |
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|
| T |
3815423 |
aggtgaagttaaaagggtttggcatgagccccataaaccagtcaacatatcaaaacctcattcaacaaatggaat |
3815349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 3999846 - 3999787
Alignment:
| Q |
86 |
aggtggagttaaaagggtttgacataagccccataagcaactccacatatcataatctca |
145 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||| | |||| |||||||| ||||||| |
|
|
| T |
3999846 |
aggtggagttaaaagggtttggcatcagccccataaaccactcaacatatcacaatctca |
3999787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 78 - 159
Target Start/End: Original strand, 3922440 - 3922521
Alignment:
| Q |
78 |
aagaccagaggtggagttaaaagggtttgacataagccccataagcaactccacatatcataatctcattcaacaaatggaa |
159 |
Q |
| |
|
||||| |||||| ||||||||||||||| ||| |||||||||| | | || ||||||| ||||| ||||||||||||||| |
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|
| T |
3922440 |
aagacgagaggtaaagttaaaagggtttggcatgagccccataaaccagtcaacatatcgcaatctaattcaacaaatggaa |
3922521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 160
Target Start/End: Complemental strand, 3807817 - 3807745
Alignment:
| Q |
88 |
gtggagttaaaagggtttgacataagccccataagcaactccacatatcataatctcattcaacaaatggaat |
160 |
Q |
| |
|
||||| ||||||||||||| ||| ||||| |||| | | || |||||||| ||| |||||||||||||||||| |
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|
| T |
3807817 |
gtggaattaaaagggtttggcatgagccctataaaccagtcaacatatcacaatttcattcaacaaatggaat |
3807745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 3957831 - 3957866
Alignment:
| Q |
19 |
cagacaaggtttaaaattaaggttacagcaaggaca |
54 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3957831 |
cagacaaggtttaaaatcaaggttacagcaaggaca |
3957866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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