View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3878_high_6 (Length: 496)
Name: NF3878_high_6
Description: NF3878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3878_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 5 - 473
Target Start/End: Original strand, 38124159 - 38124627
Alignment:
| Q |
5 |
ttcttacagttaaattgatttggctatgtatttttgatgagtttgtaattataaggttcaatgggattttcaggtaataaggggattggatcagggaatt |
104 |
Q |
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| T |
38124159 |
ttcttacagttaaattgatttggctatgtattttttatgagtttgtaattataaggttcaatgggattttcaggtaataaggggattggatcagggaatt |
38124258 |
T |
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| Q |
105 |
ttagggggtgaaggagtacctccaatgcggataggtattaaatttaatttgaagtgtttaagtttcattgttcatagtatatgacactttctaaatttat |
204 |
Q |
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| T |
38124259 |
ttagggggtgaaggagtacctccaatgcggataggtattaaatttaatttgaagtgtttaagtttcattgttcatagtatatgacactttctaaatttat |
38124358 |
T |
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| Q |
205 |
ttactatttttacttaggtgggaaacgcaaactcacgattcctccattgttagcgtatggtcctgaacctgcaggctgtttctcaggtctcattcattat |
304 |
Q |
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| T |
38124359 |
ttactatttttacttaggtgggaaacgcaaactcacgattcctccattgttagcgtatggtcctgaacctgcaggctgtttctcaggtctcattcattat |
38124458 |
T |
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| Q |
305 |
taattattactgtgttattatgtaatttgctgctaaacatggataactactttaatcaaacctgaaactcaaaaatctagtagacacgtggatgaagaaa |
404 |
Q |
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| T |
38124459 |
taattattactgtgttattatgtaatttgctactaaacatggataactactttaatcaaacctgaaactcaaaaatctagtagacacgtggatgaagaaa |
38124558 |
T |
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| Q |
405 |
tgaatcattaattgtgtatttggtcatatgcattgcgcgtatgtgccccggtatattttctaccactgt |
473 |
Q |
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| T |
38124559 |
tgaatcattaattgtgtatttggtcatatgcattgcgcgtatgtgccccggtatattttctaccactgt |
38124627 |
T |
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