View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3878_high_8 (Length: 463)
Name: NF3878_high_8
Description: NF3878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3878_high_8 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 203 - 463
Target Start/End: Complemental strand, 39299905 - 39299660
Alignment:
| Q |
203 |
ccatgaacttggttcaaactttcagtctcttcctgatcgtaacgagaatcaaagttaccttgatcgtgcacatgttcgtgatagtgcaaatgtagcagga |
302 |
Q |
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| T |
39299905 |
ccatgaacttggttcaaactttcagtctcttcctgatcgtaacgagaatcaaagttaccttgatcgtgcacatgttcgtgatagtgcaaatgtagcagga |
39299806 |
T |
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| Q |
303 |
aacagagtaggtggaaaagaagattttggtggttttcgtgatgtgggaaagtttcaaatggaatcaaaaggtttaacagatgatagagaaaaacttgata |
402 |
Q |
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| T |
39299805 |
aa---------------agaagattttggtggtgttcgtgatgtgggaaagtttcaaatggaatcaaaaggtttaaccgatgatagagaaaaacttgata |
39299721 |
T |
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| Q |
403 |
gccgaaccaaagtggtttctggaacaccacatgtgaaagaaatgaacagaggaatgggaac |
463 |
Q |
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| T |
39299720 |
gccgaaccaaagtggtttctggaacaccacatgtgaaagaaatgaacagaggaatgggaac |
39299660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 11 - 188
Target Start/End: Complemental strand, 39300331 - 39300154
Alignment:
| Q |
11 |
cacagacgagagagatattcatgttgaaaaagacagagtcccaaagatgacaactcattttgaacaacttacagtggtagacaaggaaccaccacatggt |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39300331 |
cacaaacgagagagatattcatgttgaaaaagacagagtcccaaagatgactacccattttgaacaacttacagtggtagacaaggaaccaccacatggt |
39300232 |
T |
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| Q |
111 |
agcattgaagcattacaaggtggtgaaatgaacaaagatcatgcaggaaaagccattggagatattggtggaagagga |
188 |
Q |
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| T |
39300231 |
agcattgaagcattacaaggtggtgaaatgaacaaagatcatgcaggaaaagccattggagatattggtggaagagga |
39300154 |
T |
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