View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3878_high_9 (Length: 404)
Name: NF3878_high_9
Description: NF3878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3878_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 9 - 315
Target Start/End: Original strand, 130637 - 130936
Alignment:
| Q |
9 |
acatcatcaacaacatattaaggatttgtttgttttctaaaattattttaattcttcctattatcatcatgccatgaatggaagattaatgtatttaaca |
108 |
Q |
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| T |
130637 |
acatcaccaacaacatattaaggattcgtttgttttctaaaattattttaattcttcctattatcatcatgccatgaatggaagattaatgtatttaaca |
130736 |
T |
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| Q |
109 |
attgtgataaagaaaatgaaagaccaataaaggagagttcattttttaatatattgaaaaaagtgttgatgattgaagggaacatgtgatcccctttgaa |
208 |
Q |
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| T |
130737 |
attgtgataaagaaaatgaaagaccaataaaggagagttcattttttaatatattgaaaatagtgttgatgattgaagggaacatgtgatcccctttgaa |
130836 |
T |
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| Q |
209 |
gaagggttgagggttgaacaaggtatgaacattgatgattgtaggatcatgaatgttttgattgtagtgatggtagggaggagaattcatgacaatgaaa |
308 |
Q |
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| T |
130837 |
ga-------agggttgaacaaggtatgaacattgatgattgtaggatcatgaatgttttgattatagtgatggtagggaggagaattaatgacaatgaaa |
130929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 9234401 - 9234365
Alignment:
| Q |
278 |
atggtagggaggagaattcatgacaatgaaagcacca |
314 |
Q |
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| T |
9234401 |
atggtagggaggggaattcatggcaatgaaagcacca |
9234365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 225 - 320
Target Start/End: Original strand, 22220617 - 22220712
Alignment:
| Q |
225 |
aacaaggtatgaacattgatgattgtaggatcatgaatgttttgattgtagtgatggtagggaggagaattcatgacaatgaaagcaccagttgtt |
320 |
Q |
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| T |
22220617 |
aacaatgtatgaacattgatgattgtaggatcataaaggttgtgattgtagtagtggttgggaggagaatccatgacaataaaagcaccaattgtt |
22220712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 316 - 359
Target Start/End: Original strand, 3905199 - 3905242
Alignment:
| Q |
316 |
ttgttcataagtgatagagataatattctaaaagagattaaaaa |
359 |
Q |
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| T |
3905199 |
ttgttcataaatgagagagataatattctaaaagagactaaaaa |
3905242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 352
Target Start/End: Complemental strand, 11927163 - 11927126
Alignment:
| Q |
315 |
gttgttcataagtgatagagataatattctaaaagaga |
352 |
Q |
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| T |
11927163 |
gttgttcataaatgaaagagataatattctaaaagaga |
11927126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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