View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3878_low_1 (Length: 746)
Name: NF3878_low_1
Description: NF3878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3878_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 225 - 728
Target Start/End: Complemental strand, 47581558 - 47581049
Alignment:
| Q |
225 |
tgtaatcttctactgcctcttatcttgcatggctcaaacgtgtatactatctgaatttaacaaaaagttgtttataatcttcnnnnnnnctgcgtttatg |
324 |
Q |
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| T |
47581558 |
tgtaatcttctactgcctcttatcttgcatggctcaaacgtgtatactatctgaatttaacaaaaagttgtttataatcttctttttttctgtgtttatg |
47581459 |
T |
|
| Q |
325 |
attttcatgttcaaaataaccacattgtcatgttcattcaaagaaccaacagaaaaacaagtgttgtagagtatagaccctaccctacccattttctcac |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47581458 |
attttcatgttcaaaataaccacattgtcatgttcattcaaagaaccaacagaaaaacaagtgttgtagagtatagaccctaccctacccattttctcac |
47581359 |
T |
|
| Q |
425 |
aggtaaaaacaggaccagtaataattcagttaaagtgagtattattttctttctttcctttaacaaagcagagagaaaacaatttaacaagatcaaatta |
524 |
Q |
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||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
47581358 |
aggaaaaaacaggaccagtaataattcagttaaagtgaatattattttctttctttcctttagcaaagcagagagaaaacaatttaacaagatcaaatta |
47581259 |
T |
|
| Q |
525 |
cagaattatgcatcaaatctatgtatatattcgttaaactaaatctgacatataacaaggtcataatttaaataaattctccatgataaatgaaaattct |
624 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47581258 |
cagaattatgcatcaaatctatgtataaattcgttaaactaaatctgacatataacaaggtcataatttaaataaattctccatgataaatgaaaattct |
47581159 |
T |
|
| Q |
625 |
tgcaaaagagaaataggtatatgaataaagagttgaaaagatgaatatgcat------nnnnnnnngaggaaattgagttaccttgtattatacacctgc |
718 |
Q |
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| T |
47581158 |
tgcaaaagagaaataggtatatgaataaagagttgaaaagatgaatatgcataaaaaaaaaaaaaagaggaaattgagttaccttgtattatacacctgc |
47581059 |
T |
|
| Q |
719 |
aagaggagct |
728 |
Q |
| |
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|||||||||| |
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| T |
47581058 |
aagaggagct |
47581049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 12 - 195
Target Start/End: Complemental strand, 47581770 - 47581588
Alignment:
| Q |
12 |
atcatcattaatgataaaaaggaaaagtaacaagggaatcttctctgcaacacaatactacnnnnnnnncttctttctttcaccatttgattgaatgaat |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
47581770 |
atcatcattaatgataaaaaggaaaagtaacaagggaatcttctctgcaacacaatactacttttttttcttctttctttcaccatttgattgaatgaat |
47581671 |
T |
|
| Q |
112 |
cagnnnnnnnnnactagtacattagttaattggaaagttcaccaattctacacacacaactaggaaacattaaattttacatgc |
195 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
47581670 |
cagtttttttt-actagtacattagttaattggaaagttcaccaattctacacagacaactaggaaacatttaattttacatgc |
47581588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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