View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3878_low_10 (Length: 394)
Name: NF3878_low_10
Description: NF3878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3878_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 19 - 390
Target Start/End: Original strand, 885881 - 886252
Alignment:
| Q |
19 |
attaggttacaagagagtatcattttgcttctctcacgttggtatgcccttcaaatggccatcaagaaccaatggggtggttgtgattccctccaaaaat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
885881 |
attaggttacaagagagtatcattttgcttctctcacgttggtatgcccttcaaatggccattaagaaccaatggggtggttgtgattccctccaaaaat |
885980 |
T |
|
| Q |
119 |
cacaccaacttgcttctcatttattctcttggctctccaaatccaatggtaattgtgttctcgactaattttctatttattgattcatccttcattatgt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
885981 |
cacaccaacttgcttctcatttattctcttggctctccaaatccaatggtaattgtgttctcgactaattttctatttattgattcatccttcattatgt |
886080 |
T |
|
| Q |
219 |
ctcatttannnnnnnnctttgttatatgtaaatttgtattgattacagcaccgattcgtattgaagatttagaaaatctactctatgagtccatgttgct |
318 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
886081 |
ctcatttattttttttctttgttatatgtaaatttgtattgattacagcaccgattcgtattgaagatttagaaaatctactctatgagtccatgttgct |
886180 |
T |
|
| Q |
319 |
tacatttaatacagagatagaagatggcagcattgaacaggtatacatacacgcatatatcctttgcttctc |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
886181 |
tacatttaatacagagatagaagatggcagcattgaacaggtatacatacacgcatatatcctttgcctctc |
886252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University