View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3878_low_11 (Length: 366)
Name: NF3878_low_11
Description: NF3878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3878_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 54468483 - 54468128
Alignment:
| Q |
1 |
atttcttttcgcatgtcttcatctttcatgactagttttcgatattgtcccaaatcttttcttgtttctacaattgctacaaactttatcgcaaaataag |
100 |
Q |
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| T |
54468483 |
atttcttttcgcatgtcttcatctttcatgactagttttcgatattgtcccaaatcttttcttgtttctacaattgctacaaactttatcgcaaaataag |
54468384 |
T |
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| Q |
101 |
aaattaataagacatgtgaaaaaataatgatctatatgtgcagttgtatagctctcttttttaatatagaatcgtttaaaagagaaatttattccctaac |
200 |
Q |
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| T |
54468383 |
aaattaataagatatatgaaaaaataatggtctatatgtgcagttgtatagctctcttttttaatatagaatcgtttaaaagagaaatttattccctaac |
54468284 |
T |
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| Q |
201 |
cgaaaaggataaaacactcataattatt--ttatattc-nnnnnnnaaggatagggagatcatattgaacatcgtaagaagtgttggagttgagataaaa |
297 |
Q |
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| T |
54468283 |
cgaaaaggaaaaaacactcataattatttattatattcttttttttaaggatagggagatcatattgaacatcgtaagcagtgttggagttgagataaaa |
54468184 |
T |
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| Q |
298 |
tgtggaagccttttctaagcagcaaagccaccgtattaacttgtatcctaataaat |
353 |
Q |
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| T |
54468183 |
tgtggaagccttttctaagcagcaaagccaccatattaacttgtatcctaataaat |
54468128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 11227650 - 11227583
Alignment:
| Q |
22 |
tctttcatgactagttttcgatattgtcccaaatcttttcttgtttctacaattgctacaaactttat |
89 |
Q |
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| T |
11227650 |
tctttcatgactagtttccaatgttctcgcagatcatttcttgattctacaattgctacaaactttat |
11227583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 11240339 - 11240256
Alignment:
| Q |
11 |
gcatgtcttcatctttcatgactagttttcgatattgtcccaaatcttttcttgtttctacaattgctacaaactttatcgcaa |
94 |
Q |
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||||||||| | ||||||||||||||| | ||||| || || ||| ||||||| ||| ||||| |||||||||||||| |||| |
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| T |
11240339 |
gcatgtcttggtttttcatgactagtttccaatattctcgcagatcatttcttgattccacaatagctacaaactttattgcaa |
11240256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 54458972 - 54458884
Alignment:
| Q |
1 |
atttcttttcgcatgtcttcatctttcatgactagttttcgatattgtcccaaatcttttcttgtttctacaattgctacaaactttat |
89 |
Q |
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| T |
54458972 |
atttcttctggcatgttttgatctttcatgaataatttccaatattctcccagattatttcttgattctacgatttctacaaactttat |
54458884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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