View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3878_low_15 (Length: 332)
Name: NF3878_low_15
Description: NF3878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3878_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 14 - 310
Target Start/End: Complemental strand, 49265761 - 49265465
Alignment:
| Q |
14 |
tagcaaaggggttggaatatatgcataaggcaaatccccctgtgatatatagagacttaaagtcatccaacgtccttctcggtgaaaattatcatgccaa |
113 |
Q |
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| T |
49265761 |
tagcaaaggggttggaatatatgcataaggcaaatccccctgtgatatatagagacttaaagtcatccaacgtccttctcggtgaaaattatgatgccaa |
49265662 |
T |
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| Q |
114 |
gttatcagattttgggtttgcaaaacttggaccaattggtgatatgactcatgtatccacacaagtagtgggaacatatggttattgtgcccctgaatat |
213 |
Q |
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| T |
49265661 |
gttatcagattttgggttcgcaaaacttggaccaattggtgatatgactcatgtatccacacaagtagtgggaacatatggttattgtgcccctgaatat |
49265562 |
T |
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| Q |
214 |
cttatgaccggacaactaactataaaatctgatgtgtatagctatggagtggtcatgctcgaacttatttcaggacgtagggctcttgataatacac |
310 |
Q |
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| T |
49265561 |
cttatgaccggacaactaactattaaatctgatgtgtatagctatggagtggtcatgctcgaacttatttcaggacgcagggctcttgataatacac |
49265465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 15 - 234
Target Start/End: Original strand, 6603523 - 6603745
Alignment:
| Q |
15 |
agcaaaggggttggaatatatgcat---aaggcaaatccccctgtgatatatagagacttaaagtcatccaacgtccttctcggtgaaaattatcatgcc |
111 |
Q |
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| T |
6603523 |
agcaaagggattggaatacttgcatgacaaggcaaatccccctgtgatctatagagacttaaaatcatctaacatcctcctagatgaaggttttcatccc |
6603622 |
T |
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| Q |
112 |
aagttatcagattttgggtttgcaaaacttggaccaattggtgatatgactcatgtatccacacaagtagtgggaacatatggttattgtgcccctgaat |
211 |
Q |
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| T |
6603623 |
aagttatcagattttgggctggcaaaacttggtccagttggtgataagactcatgtatccacacgtgtaatgggaacatatggctattgtgccccggagt |
6603722 |
T |
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| Q |
212 |
atcttatgaccggacaactaact |
234 |
Q |
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| T |
6603723 |
atgctatgactggtcaactaact |
6603745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 101 - 203
Target Start/End: Original strand, 40923808 - 40923910
Alignment:
| Q |
101 |
attatcatgccaagttatcagattttgggtttgcaaaacttggaccaattggtgatatgactcatgtatccacacaagtagtgggaacatatggttattg |
200 |
Q |
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| T |
40923808 |
attatcatcccaagttatccgattttggcttggcaaaagtaggtccaatcggtgatatgactcatgtttcaacaagagttatgggaacatatggctactg |
40923907 |
T |
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| Q |
201 |
tgc |
203 |
Q |
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||| |
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| T |
40923908 |
tgc |
40923910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 101 - 203
Target Start/End: Original strand, 13172350 - 13172452
Alignment:
| Q |
101 |
attatcatgccaagttatcagattttgggtttgcaaaacttggaccaattggtgatatgactcatgtatccacacaagtagtgggaacatatggttattg |
200 |
Q |
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|||||||| |||||||||| ||||| || || |||||| | || ||||||||||||| ||||||||| || ||| ||| ||||||||||||| ||||| |
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| T |
13172350 |
attatcatcccaagttatctgatttcggcttggcaaaagtaggtccaattggtgataagactcatgtgtcaacaagggtaatgggaacatatgggtattg |
13172449 |
T |
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| Q |
201 |
tgc |
203 |
Q |
| |
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||| |
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| T |
13172450 |
tgc |
13172452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 182 - 254
Target Start/End: Complemental strand, 52960296 - 52960224
Alignment:
| Q |
182 |
tgggaacatatggttattgtgcccctgaatatcttatgaccggacaactaactataaaatctgatgtgtatag |
254 |
Q |
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||||||| |||||||| ||||| ||||||||| |||||| |||||||||||| ||||||| ||||| ||||| |
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| T |
52960296 |
tgggaacttatggttactgtgctcctgaatatgctatgactggacaactaactgtaaaatcagatgtatatag |
52960224 |
T |
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