View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3878_low_17 (Length: 327)

Name: NF3878_low_17
Description: NF3878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3878_low_17
NF3878_low_17
[»] chr6 (1 HSPs)
chr6 (12-106)||(28963075-28963169)
[»] chr2 (1 HSPs)
chr2 (144-309)||(4745227-4745392)
[»] chr8 (2 HSPs)
chr8 (12-105)||(3442750-3442843)
chr8 (12-100)||(24115842-24115931)
[»] chr4 (1 HSPs)
chr4 (28-105)||(26683799-26683875)


Alignment Details
Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 28963169 - 28963075
Alignment:
Q  12 atgaattagttaaaagaaagataaaaattcaagagcagcaattcattcttaagttgtcgtgcatggtttgctctcgtaccataaagcatttttct 106  Q
    |||||||||||||| ||||||||||||| ||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28963169 atgaattagttaaaggaaagataaaaatccaaggtcagcaattcattcctaagttgtcgtgcatggtttgctctcgtaccataaagcatttttct 28963075  T

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Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 144 - 309
Target Start/End: Complemental strand, 4745392 - 4745227
Alignment:
Q  144 ctttaaaattgttctaaacttcatttactactcacttatctctctgcccatcacagaaattgtgcaatcgtttgagtttcaaaatcagcaagttacaaag 243  Q
    ||||||| |||||| |||||||| ||||||| |||| ||||||||||| |||| | |||||||||||| |||  ||| | ||||| ||  || ||| |||    
T  4745392 ctttaaagttgttccaaacttcacttactacccactcatctctctgccaatcatataaattgtgcaattgttaaagtatgaaaattagtcagctacgaag 4745293  T
Q  244 gttaaaatatgggatgtaagctccaaacattgatttggcaattaccaagttacaagacgaaacata 309  Q
    |||||| |||||||||| || ||||||| |||||||||| |||||||||||||||| |||||||||    
T  4745292 gttaaagtatgggatgtgaggtccaaactttgatttggcgattaccaagttacaagccgaaacata 4745227  T

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Target: chr8 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 3442750 - 3442843
Alignment:
Q  12 atgaattagttaaaagaaagataaaaattcaagagcagcaattcattcttaagttgtcgtgcatggtttgctctcgtaccataaagcatttttc 105  Q
    |||||||||||||  ||||||||||||| |||| |||||||||||||| ||||||||||||||||||||| |||||| | ||||||||||||||    
T  3442750 atgaattagttaatggaaagataaaaatccaagggcagcaattcattcgtaagttgtcgtgcatggtttgttctcgtgcaataaagcatttttc 3442843  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 24115842 - 24115931
Alignment:
Q  12 atgaattagttaaaagaaagataaaaattcaagagcagcaattcattcttaagttgtcgtgcat-ggtttgctctcgtaccataaagcat 100  Q
    |||||||| ||||| ||||||||||||| |||| | ||||||||||||  |||||||||||||| |||||| ||||||||||||||||||    
T  24115842 atgaattaattaaatgaaagataaaaatccaagggaagcaattcattcgcaagttgtcgtgcatgggtttgttctcgtaccataaagcat 24115931  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 26683799 - 26683875
Alignment:
Q  28 aaagataaaaattcaagagcagcaattcattcttaagttgtcgtgcatggtttgctctcgtaccataaagcatttttc 105  Q
    ||||||||||||||||| || ||| ||||||   |||||||||||||||||||||||| |||||||||||||||||||    
T  26683799 aaagataaaaattcaagggcggca-ttcatttgcaagttgtcgtgcatggtttgctcttgtaccataaagcatttttc 26683875  T

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