View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3878_low_18 (Length: 319)

Name: NF3878_low_18
Description: NF3878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3878_low_18
NF3878_low_18
[»] chr4 (13 HSPs)
chr4 (11-319)||(5106347-5106669)
chr4 (26-312)||(5102135-5102440)
chr4 (141-319)||(2467235-2467413)
chr4 (138-261)||(2525503-2525626)
chr4 (209-268)||(2621411-2621470)
chr4 (282-319)||(2367981-2368018)
chr4 (282-319)||(2373547-2373584)
chr4 (284-319)||(12124538-12124573)
chr4 (282-319)||(2518926-2518963)
chr4 (150-261)||(2518981-2519092)
chr4 (37-92)||(2621220-2621275)
chr4 (282-319)||(2534006-2534043)
chr4 (291-319)||(2363162-2363190)
[»] chr7 (1 HSPs)
chr7 (11-196)||(2576429-2576623)
[»] chr1 (1 HSPs)
chr1 (11-92)||(15837996-15838077)


Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 319
Target Start/End: Original strand, 5106347 - 5106669
Alignment:
Q  11 catcatcaaccgtcgtcgattctaggtcacaatcacagatcaaaccatccctttcattcatcgcctcttcaaaaggttcccttacgtcacat-------- 102  Q
    ||||| |||||||| |||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  5106347 catcaccaaccgtcctcgattctcggtcacaatcactaatcaaaccatccctttcattcatcgcctcttcaaaaggttcccttacgtcacatcactcact 5106446  T
Q  103 ------cactctctcctccggagacctcaacgagcttctcgaccaaatctctgctttccctttaaacatcaaattgctcactctctaccaccccattaag 196  Q
          |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  5106447 caacatcactctctcctccggagacctcaacgagcttctgtaccaaatctctgctttccctttaaatatcaaattgctcgctctctaccaccccattaag 5106546  T
Q  197 tttcctaaaaacgggttgcgagctttctccctaaaggtgaaaaatttgacatctatcacttgttaccgaattgcttcgggtgtagacaagagtgatctct 296  Q
    ||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5106547 tttcctaaaattgggttgcgagctttctccctaaagatgaaaaatttgacatctatcacttgttaccgaattgcttcgggtgtagacaagagtgatctct 5106646  T
Q  297 tcttcattgctgattgtttccct 319  Q
    |||||||||||||||||||||||    
T  5106647 tcttcattgctgattgtttccct 5106669  T

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Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 26 - 312
Target Start/End: Original strand, 5102135 - 5102440
Alignment:
Q  26 tcgattctaggtcacaatcacagatcaaaccatccctttcattcatcgcctcttcaaaaggttcccttacgtcacatcactc----------tctcctcc 115  Q
    |||||||| |||||||||||| |||| ||||||||||||||||| || ||| ||| ||||||||||| ||||||||||||||          |||| |||    
T  5102135 tcgattctcggtcacaatcactgatcgaaccatccctttcattcctctccttttcgaaaggttccctaacgtcacatcactcaacatcaccctctcttcc 5102234  T
Q  116 ggagacctcaacga---------gcttctcgaccaaatctctgctttccctttaaacatcaaattgctcactctctaccaccccattaagtttcctaaaa 206  Q
     ||| ||||||||          ||||||   || ||||||| ||||  ||||||||||||||| |||| |||||||||||||||||||| |||||| ||    
T  5102235 cgagtcctcaacgtcctcaacacgcttcttatcctaatctctactttgactttaaacatcaaatcgctcgctctctaccaccccattaagcttcctacaa 5102334  T
Q  207 acgggttgcgagctttctccctaaaggtgaaaaatttgacatctatcacttgttaccgaattgcttcgggtgtagacaagagtgatctcttcttcattgc 306  Q
    | ||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||  ||| || ||||| | ||||||||| ||||    
T  5102335 aagggttgcgagcattctcccaaaagatgaaaaatttgacatctatcacttgttaccgaattgcttcggaggtataccagagtcacctcttcttctttgc 5102434  T
Q  307 tgattg 312  Q
    ||||||    
T  5102435 tgattg 5102440  T

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Target: chr4; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 141 - 319
Target Start/End: Complemental strand, 2467413 - 2467235
Alignment:
Q  141 aaatctctgctttccctttaaacatcaaattgctcactctctaccaccccattaagtttcctaaaaacgggttgcgagctttctccctaaaggtgaaaaa 240  Q
    |||||||  ||||||||||  || ||||||  |||||||||||||||||||| | | |||||  | | ||||||||||||||||||  | || |||||||    
T  2467413 aaatctccactttccctttggacctcaaatccctcactctctaccaccccataacggttcctgcagatgggttgcgagctttctccaaagagatgaaaaa 2467314  T
Q  241 tttgacatctatcacttgttaccgaattgcttcgggtgtagacaagagtgatctcttcttcattgctgattgtttccct 319  Q
    |||||||||  |||||||||||||||||||||  | | | |||||||  ||||| ||||||||||||||||||||||||    
T  2467313 tttgacatcactcacttgttaccgaattgcttttgatatcgacaagaacgatcttttcttcattgctgattgtttccct 2467235  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 261
Target Start/End: Complemental strand, 2525626 - 2525503
Alignment:
Q  138 accaaatctctgctttccctttaaacatcaaattgctcactctctaccaccccattaagtttcctaaaaacgggttgcgagctttctccctaaaggtgaa 237  Q
    ||||||||||  ||||||||||| || |||||| |||||||||||||||||||   ||| ||||| |||| | |||||| | ||| |||   ||  ||||    
T  2525626 accaaatctccactttccctttagacctcaaatcgctcactctctaccacccccccaaggttcctcaaaatgagttgcgtgttttgtccaagaaaatgaa 2525527  T
Q  238 aaatttgacatctatcacttgtta 261  Q
    ||||||||||||| ||||||||||    
T  2525526 aaatttgacatctctcacttgtta 2525503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 268
Target Start/End: Original strand, 2621411 - 2621470
Alignment:
Q  209 gggttgcgagctttctccctaaaggtgaaaaatttgacatctatcacttgttaccgaatt 268  Q
    ||||||||||||||||||  |||  ||||||||||||||||| |||||||||||||||||    
T  2621411 gggttgcgagctttctccaaaaatatgaaaaatttgacatctctcacttgttaccgaatt 2621470  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 319
Target Start/End: Original strand, 2367981 - 2368018
Alignment:
Q  282 acaagagtgatctcttcttcattgctgattgtttccct 319  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2367981 acaagagtgatctcttcttcattgctgattgtttccct 2368018  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 319
Target Start/End: Original strand, 2373547 - 2373584
Alignment:
Q  282 acaagagtgatctcttcttcattgctgattgtttccct 319  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2373547 acaagagtgatctcttcttcattgctgattgtttccct 2373584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 284 - 319
Target Start/End: Complemental strand, 12124573 - 12124538
Alignment:
Q  284 aagagtgatctcttcttcattgctgattgtttccct 319  Q
    ||||||||||||||||||||||||||||||||||||    
T  12124573 aagagtgatctcttcttcattgctgattgtttccct 12124538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 319
Target Start/End: Complemental strand, 2518963 - 2518926
Alignment:
Q  282 acaagagtgatctcttcttcattgctgattgtttccct 319  Q
    |||||| |||||||||||||||||||||||||||||||    
T  2518963 acaagaatgatctcttcttcattgctgattgtttccct 2518926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 2519092 - 2518981
Alignment:
Q  150 ctttccctttaaacatcaaattgctcactctctaccaccccattaagtttcctaaaaacgggttgcgagctttctccctaaaggtgaaaaatttgacatc 249  Q
    ||||||||||| || ||| || ||||||||||||||| || || |   |||||||| | ||||||| |||||| || | |||  |||||||||||||||     
T  2519092 ctttccctttagacctcatatcgctcactctctaccatcctatcacccttcctaaagaagggttgcaagctttgtctcaaaacatgaaaaatttgacata 2518993  T
Q  250 tatcacttgtta 261  Q
    | ||||||||||    
T  2518992 tctcacttgtta 2518981  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 2621220 - 2621275
Alignment:
Q  37 tcacaatcacagatcaaaccatccctttcattcatcgcctcttcaaaaggttccct 92  Q
    |||||||| | ||| |||||||||||||||||| |||||||||| | |||||||||    
T  2621220 tcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttccct 2621275  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 319
Target Start/End: Complemental strand, 2534043 - 2534006
Alignment:
Q  282 acaagagtgatctcttcttcattgctgattgtttccct 319  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  2534043 acaagaatgatctcttcttgattgctgattgtttccct 2534006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 291 - 319
Target Start/End: Original strand, 2363162 - 2363190
Alignment:
Q  291 atctcttcttcattgctgattgtttccct 319  Q
    |||||||||||||||||||||||||||||    
T  2363162 atctcttcttcattgctgattgtttccct 2363190  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 196
Target Start/End: Original strand, 2576429 - 2576623
Alignment:
Q  11 catcatcaaccgtcgtcgattctaggtcacaatcacagatcaaaccatccctttcattcatcgcctcttcaaaaggttcccttacgtca---------ca 101  Q
    ||||| ||| |||| |||||||| |||||||||||| |||  ||||||||||||||||  |||||||||| ||||| ||||| ||||||         ||    
T  2576429 catcaccaatcgtcttcgattctcggtcacaatcaccgattgaaccatccctttcatttgtcgcctcttcgaaaggatccctaacgtcaatcactcaaca 2576528  T
Q  102 tcactctctcctccggagacctcaacgagcttctcgaccaaatctctgctttccctttaaacatcaaattgctcactctctaccaccccattaag 196  Q
     |||||||| |||| ||| |||||||| || |||   | ||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||    
T  2576529 acactctctactcccgagtcctcaacgcgcatcttaccgaaatctctattttccctttaaacatcaaattgctcgctctctaccaccccattaag 2576623  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 15837996 - 15838077
Alignment:
Q  11 catcatcaaccgtcgtcgattctaggtcacaatcacagatcaaaccatccctttcattcatcgcctcttcaaaaggttccct 92  Q
    ||||| ||||||||  |||||||   ||| ||||| ||||||||| ||||||||||||| |  ||||||| |||||||||||    
T  15837996 catcaccaaccgtctccgattctccctcaaaatcatagatcaaacaatccctttcattcctaacctcttccaaaggttccct 15838077  T

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