View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3878_low_21 (Length: 279)
Name: NF3878_low_21
Description: NF3878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3878_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 24 - 267
Target Start/End: Original strand, 32852846 - 32853090
Alignment:
| Q |
24 |
actgctacagaataatgtggatacaacagggtattaaaagcaaaactgcaagaaagcagtgaagaattggaaagacatgtgagttcatactgaagttttt |
123 |
Q |
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| T |
32852846 |
actgctacagaataatgtggatacaacagggtattaaaagcaaaactgcaagaaagcagtgaagaattggaaagacatgtgagttcatactgaagttttt |
32852945 |
T |
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| Q |
124 |
tcatatgaatctactgaaacataatcaattcctaaacttatggtcaaatacaatacttcctggtccttattataagaag-nnnnnnnntcagtttttaga |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
32852946 |
tcatatgaatctactgaaacataatcaattcctaaacttatggtcaaatacaatacttcctcgtccttattataagaagaaaaaaaaatcagtttttaga |
32853045 |
T |
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| Q |
223 |
ttttttgggtctccataaccaagtgattgaatataaccgcatatt |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32853046 |
ttttttgggtctccataaccaagtgattgaatataaccgcatatt |
32853090 |
T |
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