View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3878_low_24 (Length: 254)
Name: NF3878_low_24
Description: NF3878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3878_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 38124034 - 38123793
Alignment:
| Q |
1 |
caatatcaatcgttaattaactaattaagtttttgcatatagaaaatgagtaaaagagtaataaacagcttacatcaataagctctcctaaaggagcttc |
100 |
Q |
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| T |
38124034 |
caatatcaatcgttaattaactaattaaatttttgcatatagaaaatgagtaaaagagtaataaacagcttacatcaataagctctcctaaaggagcttc |
38123935 |
T |
|
| Q |
101 |
atcaccaaaaccctcaacataatcacagtaaccaagcccagatttaacataattaagctcacacattggttctcccacagtagcatagtattcaattctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38123934 |
atcaccaaaaccctcaacataatcacagtaaccaagcccagatttaacataattaagctcacacattggttctcccacagtagcatagtattcaattctc |
38123835 |
T |
|
| Q |
201 |
gttgcatctgcatccaacgctgttaaccccattacctatgct |
242 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38123834 |
gttgcatctgcatccaacgctgttaaccccattacccatgct |
38123793 |
T |
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